Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03176 ATGGAAGGAACTCGTAGATTGTTGGATAGATCCAGAGAACCAGGTCCCAAGAAACCCCGATTGATGGAAGGTTCAAACCCTACTTCACGGCCGTTTCCTCAACGACAACCTGCCTCGGGGGTTGGTTCGATGGCTAGGTTTCGAATAAATGACAGAGACGTTGAAAGTAGTGAAATCGATCATGGTGACGGTGGTTATCATCCGCAGCCACCGCCGCATCAAGAGCTTGTGACTCAGTATAGAGCTGCTTTGGCTGAGCTTACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATAATTGCTGGAGAGAATCTTTCGGCGGCCAAATCAATTGCTGGAGCTGTTTGTGCTAATATTCTTGAGGTTTCAAGTGATCAAAAGCTGCCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGTCAGACTACCTGAGGTATTCTGCAATACGTACAAACATGTTGATCCTCCTGTGCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAAATAATTGAGAAGGAACTTGGCTTTGCTCCCACAGTCAATGGTTCAGCTTCTGCATCTGCTACAATCAGAAATGATTCTCAGTCTCAACGTCCACCTCATAGCATTCATGTAAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCTAACAAGACTAAAGGAGTATTTGATGATATGTCTGAAGTTATTCCAAACGCAAATGAGGACTCAGAGAGGTCAAATAGAGCTTTGGGTGTTGCACGGCCGTGGCTGGATTCTAGGGTTAACATGCATAATAACCAGCATACTCGTAGAGATGCATTTAACGATTCTGTTCCTGACAAGAGCATTAGCGGAGCCTATGGAGATGAGGAATATAATTCTAGTGGTTCAGATGTTGGAAGAACTGGAAGTAGGCTCATTGGCGGTGTTGCAGAGACCTTATCCGGGCAAAGAAATGGTTTCAGCCTCAAACATGGTTTTTCTAATCACGAAGCACCGAAGCCTATGAATTTGGATGCACATAATATAAGGAACAGTGCCATGTCAAGGAACTGGAAAAATTCCGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACCCTGGTTTGCCCGAACATGTACCTAATGTCTCTAGCAACTTGAGCTTAGACCCATGGATTGCTGATGACGACAATTTGGAAAGTGAAGATCACCTCCAAATGACACATCCAATTGGAACTAAAGTTGATAAAGGAATATCCACCGTTAAGAAACAACTACCATCATCTGGGGGCCATTCATCATTATCATGGGGATTGCAGAAGCAGCTTCCAAGTGCCAAATTGAATATGAAGTCAGGTCACTCAGAAATATTTGTTTCAGCTCCTAGTGGCTTACCCAAGAATTCAAATTCTTTGGCTGCAAGGATGAGAAATCAGTCTTCTATGCCACATACAACTATAGGAACAGCCAAAATTATGGGACAGCGACAATTTGATCCTGAAGGCGCCGAATCCCCTTCTGAACTGTCACCTTTGTCACAACAGTCTCAATCTGTGCCAGTAACAACACATCACGCTTCTTCACAAAGTCAATATATTAGAGATCCCGCACCTGCAACTCGTCCCAATGTTCAGGTTGGTAACTTGCGGAAATCACAAGCAAAGGACCCGCGGGGTCCATCATCTTCCGCAACTTCTCTCCAGGCAAAACCTCAACAACGACAGCTGGGCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAGCCAAAGAAACTTCAGAAAAGTCAACCACAAAAAGTCTTCCAGCTACATCTGTGAAGAGTGGAGTCATCCCCAACAAATCAGTAACCAAAAGTCTGGATGCAAGTAACCGTCCATCTCTCTCGGGGGTTAAGCCTACTCGGTCAACTGGTCCTTCCCCTACCACATTAATTTCTTCGGGGCCTTCCTCTGTGTCAATAGGTTCTCCAAATGATCATTCACAGACTTTGCCAAAACTACCTCAAGGGAAGGTTGTAAAGAAGCAAAAAAAATCTACTCAACCATCCACTTCCTCTAATGATCGTGGTGCATCAGCTCCAAGCTCAAATACCGTCAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGTTCATTAGTTGCTAAAGGTTTGATATCCGCAGGAACGGAGTCAGCAACTGTAGTGCCAAATGAGACCGTGATTCGATCGAAAGAGCAAACTGAAAGCATCACTACCAGTTCCTCATTGCCAATTGTTTCAATTCTTGATTCTGCAACTGTCCCAGTAAAATCTTCTAAAGTTGAGGTAGATGGTGATGAGGTGGATGGTGATGAGGTAGACGGTGATGAGGTAGATGATGCTGCAAAAGCCTCACTTGCCTTGTCTCAATCAACTAGCACAGAAATTATAAACCTCATTGGCTTTGATTTCAAGCCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAAAATTATTGGAAGAACTCCCACATCATTGCAGTAAGTGTGGTATTAGGCTAAAACACCCAGAACAGTTTGATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGATTTGAATGGAGCTTCAAGAAGATGGTACGCAAAGTCGAATGACTGGATTGCTGGCAAGGCTGGATATCTGTCAGAGTCTGAATTTACTGATTCTGTAGATGATGAACATGATGATGAAAACACATATGAGAGTCAATTGGATTCTATGGTTTTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGTGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGAGCAATGGATGTTCAAGGGGGCTGTTTACCTGAACAATTCCGATAACGTTAGTGAGATGGAAAGTAGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACAAAATATCTGTTGTGACCAATACAGAGCTTGATTAA 3036 0.4285 MEGTRRLLDRSREPGPKKPRLMEGSNPTSRPFPQRQPASGVGSMARFRINDRDVESSEIDHGDGGYHPQPPPHQELVTQYRAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVSSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYKHVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFAPTVNGSASASATIRNDSQSQRPPHSIHVNPKYLERQRLQQSNKTKGVFDDMSEVIPNANEDSERSNRALGVARPWLDSRVNMHNNQHTRRDAFNDSVPDKSISGAYGDEEYNSSGSDVGRTGSRLIGGVAETLSGQRNGFSLKHGFSNHEAPKPMNLDAHNIRNSAMSRNWKNSEEEEFVWDEMNPGLPEHVPNVSSNLSLDPWIADDDNLESEDHLQMTHPIGTKVDKGISTVKKQLPSSGGHSSLSWGLQKQLPSAKLNMKSGHSEIFVSAPSGLPKNSNSLAARMRNQSSMPHTTIGTAKIMGQRQFDPEGAESPSELSPLSQQSQSVPVTTHHASSQSQYIRDPAPATRPNVQVGNLRKSQAKDPRGPSSSATSLQAKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKAKAKETSEKSTTKSLPATSVKSGVIPNKSVTKSLDASNRPSLSGVKPTRSTGPSPTTLISSGPSSVSIGSPNDHSQTLPKLPQGKVVKKQKKSTQPSTSSNDRGASAPSSNTVNKNTLNPISNLLSSLVAKGLISAGTESATVVPNETVIRSKEQTESITTSSSLPIVSILDSATVPVKSSKVEVDGDEVDGDEVDGDEVDDAAKASLALSQSTSTEIINLIGFDFKPDVIREMHPHVITKLLEELPHHCSKCGIRLKHPEQFDRHLEWHATKEREQNDLNGASRRWYAKSNDWIAGKAGYLSESEFTDSVDDEHDDENTYESQLDSMVLADENQCLCVLCGELFEDVYCQEREQWMFKGAVYLNNSDNVSEMESRNVGPIIHARCLSENKISVVTNTELD 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03176 1011 Gene3D - 69 197 IPR008942 -
Vifa5g03176 1011 SUPERFAMILY ENTH/VHS domain 72 202 IPR008942 -
Vifa5g03176 1011 CDD CID_Pcf11 77 189 IPR047415 -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 207 224 - -
Vifa5g03176 1011 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 1 44 - -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 509 726 - -
Vifa5g03176 1011 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Vifa5g03176 1011 SMART 558neu5 75 197 IPR006569 -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 207 232 - -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 1 19 - -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 620 689 - -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 698 726 - -
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 556 593 - -
Vifa5g03176 1011 Pfam CID domain 82 190 IPR006569 -
Vifa5g03176 1011 ProSitePatterns Zinc finger C2H2 type domain signature. 860 880 IPR013087 -
Vifa5g03176 1011 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 57 1000 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vifa5g03176 1011 MobiDBLite consensus disorder prediction 518 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03176 Vifa-Chr5 1051439293 1051445530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03176 832 999 C2H2 Transcription Factor Family AT4G04885 35.955 8.87e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03176 K14400 - gmx:100788958 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03176 5 1051439293 1051445530 Vifa5g03176 5 1051439293 1051445530 ECH