Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03167 ATGGTATATCCTTATGTTATTATTCTCCTACTCTTATTTTTCCCTATAATCTTCTTCTTCCTCCTCAACCACCGTAAAAAAATCTCGGCCACCAAACGCCGTCTTCCGCCTGGACCACCGGGATGGCCTATATTTGGAAACATGTTCCAACTCGGAGAAATGCCTCACCGCACAATCGCCAAGTTAAGGCAAAAATATGGTCCAATTGTATGGCTGAAAATAGGTGCCATAAACACTATGGCAATACTCTCAGCCAAAGAAGCTACCATATTTTTCAAAAACCACGACCATAGTTTCGCAGATCGAACCATAACTGAAACCATGCGTGCTCATGATTATGACAAATCATCCGTAGCTTTGGCTCCCTACGGTTCCTACTGGCGACTCATGCGCCGTCTCGTGACCGTCGATATGTTGGTGATGAAACGCATAAACGACACGGTCTCCATTCGTCGTAGATGCGTAAACGACATGCTCACTTGGGTTGCAAAAGAAGCACTTGAGTTGGAACATGGTCGTGGACTTCACTTGTCACAGTTTGTTTTCTTCATGAGTTTTAACTTGTTTGGGAACTTGATGCTGTCGCGTGATATGTTTGATATGGAATCTGAACATGGATCTGAGTTTTTTAAAGCGGTTATGGGATTGATGGAGTGGACCGGACATGCCAACGTGTCGGATTTGTTTCCTTGGTTAAGGTGGTTGGATCCACAAGGATTAAGGAGAAAAATGGATAGGGATATGGGAAAAGCTATTAAATTTGCTTCCACGTTTGTGAAAGAGCGTTTGGATTTAGAAGGGGAGCGTGATGATGACAAAAGAGACTTCTTGGATGTGTTACTCGAGTTTCAAAGAAATGAGAACCAGAATTCACTCAACATCTCAGATAAAGATCTCAACATATTCATCTTGGAAATATTCTTGGCTGGATCTGAAACAACAAGCAGCACAATCGAATGGGCTATGACGGAACTATTATGCAACCGCGAATGTATGTTGAAGGTAAAAACTGAGCTTAATTCATTGGTTGGTGCAAAAGATGTTGAAGAGAGTGACATAGAAAAACTTCCTTACCTACAAGCCGTGGTTAAGGAATCACTAAGGTTACATCCTCCAATTCCACTACTTGTTCCAAGAAAAGCAGTTGAAGAGACAGAGTTTATGGGATACATGATACCAAAAGACACTCAAGTATTTGTGAATACATGGGCTATTGGAAGAGACCCAGATGTTTGGGAAGAACCATTGGTTTTCAAACCTGAGAGGTTTTGTGATTGTGATAGTAAGAGTTACAAGACTGATTATAAAGGACAGCATTACGAGTTTATACCATTTGGAGCTGGAAGAAGAATGTGTGCTGGTGTGCCTTTGGCTCATAGAATTCTTCATCTTGTTTTGGGATCTTTGCTTCATCGATTTGATTGGGAGCTTGATTGCAATGTTACGTCGTTGACTATGGATATGAGAGATAATCTTGGGATAACCATGAGAAAGTTTGAACCGTTGATGGCTGTGCCCAAATTAGTTGGTTCTTAA 1536 0.4141 MVYPYVIILLLLFFPIIFFFLLNHRKKISATKRRLPPGPPGWPIFGNMFQLGEMPHRTIAKLRQKYGPIVWLKIGAINTMAILSAKEATIFFKNHDHSFADRTITETMRAHDYDKSSVALAPYGSYWRLMRRLVTVDMLVMKRINDTVSIRRRCVNDMLTWVAKEALELEHGRGLHLSQFVFFMSFNLFGNLMLSRDMFDMESEHGSEFFKAVMGLMEWTGHANVSDLFPWLRWLDPQGLRRKMDRDMGKAIKFASTFVKERLDLEGERDDDKRDFLDVLLEFQRNENQNSLNISDKDLNIFILEIFLAGSETTSSTIEWAMTELLCNRECMLKVKTELNSLVGAKDVEESDIEKLPYLQAVVKESLRLHPPIPLLVPRKAVEETEFMGYMIPKDTQVFVNTWAIGRDPDVWEEPLVFKPERFCDCDSKSYKTDYKGQHYEFIPFGAGRRMCAGVPLAHRILHLVLGSLLHRFDWELDCNVTSLTMDMRDNLGITMRKFEPLMAVPKLVGS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03167 511 Pfam Cytochrome P450 36 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 FunFam Cytochrome P450 76C4 27 505 - -
Vifa5g03167 511 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Vifa5g03167 511 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 507 - -
Vifa5g03167 511 Gene3D Cytochrome P450 20 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 SUPERFAMILY Cytochrome P450 36 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa5g03167 511 CDD CYP76-like 63 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03167 Vifa-Chr5 1049439103 1049440763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03167 32 506 Cytochrome P450 AT3G52970 43.347 1.34e-139 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03167 K22983 - gmx:100785241 793.497