Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03165 ATGAACATAGCACTACCATTGGCCTTAATCTTAGCATGTCTCTGCACATTAACACATAGTGCACCACAAAATGATACACACGCCCTCACTGAATTCCGTCTCCAAACCGACTTCCACGGCTACCTCGTCAGTAACTGGACTGGCGAGGATGCCTGCAACTCCGTCTGGCACGGAGTTGAATGCTCCCCAAACGGCAGAGTTGTAGCTCTATCCATCCCTTCCCTCAATCTCCGAGGTCCTGTTGATTCTCTCTCAACACTAACATACCTACGCTTCCTTGACCTGCATGATAACCGCTTGAACGGAACCCTTGTTCCTCTCTTAAACTGTACCGATCTCGAACTACTCTATCTCTCGAGCAATGACTTCTCCGGCAAGATACCACCGGAGATATCATCCTTACGGCTTCTCATCAGACTTGACATCTCTGATAACAACATTCATGGTGAAATTCCTAAAGAGGTTTCGAAACTGAAATTTCTCCTCACTTTCCGGTTACAGGATAATGAACTCTCCGGTGAAGTTCCTGATCTTTCTTCTTCTCTACTCAATCTTAGAGAACTCAACATTACTAACAACGAACTTCAAGGACGCGTACCGGACGCAATGCTTACCAAATTCGGTAACAAAAGCTTCTCAGGCAACGACGGTCTTTGCGGAATGACGCCATTACCAAACTGTCCTGTCATTGAAGCTCATTCTCCTCCTCCTTCTGATGATGATGGTTCTGAAACTGTTCCTTCAAACCCTAGCTCTATGCCAAAATCAAGTAGAAATGCTAGCGGTATCATTCCATCCGAAACTCCTTCGAGCAAACGGAAAATGTTGAGTCCAGGTACCATTGTGGCGGTTACAGTGGCGGTTTCCGTGGCATTACTAGTGGTGGTTTCTTTCGTGGTGGCGCAATGTTGCGGAAGAGGAGGAAGATCTAACTCAACTGTTGGCATGGATAGCGAGCTTGGAAAGAGAAAAAGTGATAGCAGCAGTGGAAGTGAGAAAAAAGGTTACATTGCAAATAGCAACAATGGAGGTGTGGATAGAGATAGTGATGGAACAAGTGAACCAGAAAGAAGCAAACTAGTGTTTTTCGATCGGAGCAATGAGTTTGAGCTCGAAGATTTGCTTCGAGCTTCGGCGGAGATGCTGGGGAAGGGTAGTTTGGGAACTGTTTATAGAGCTGTTCTTGATGATGGATGTACTGTTGCTGTTAAGAGACTCAAAGATGCTAATCCTTGTGATAGGAATCAGTTTGAGCAGTATATGGAGGTTGTTGGAAAGCTTAGACACCCTAATGTTGTTAGACTCAAAGCTTATTATTATGCTAAGGAAGAAAAGCTTCTGGTTTATGATTATCTCTCTAATGGAAGCTTGTATTCTCTTCTTCATGGGAATCGTGGTCCGGGAAGGATTCCGTTAGATTGGACAACGAGAATAAGCTTGGTGTTGGGGGCAGCAAGAGGCCTAGCAAGGATTCATGGAGAGTATAGCGCAGCCAAGATACCTCATGGGAATGTGAAATCTTCCAATGTGCTACTTGACAGGAATGGAGTTGCTTGCATGGGTGACTTTGGCTTGTCGCTATTGTTGAACCCTGTTCACGCGGTTGCGAGGTTGGGTGGGTCTAGAGCTCCCGAACAAGCGGAGACTAAGAAGCTTTCACAAGAGGCGGATGTGTATGGTTTTGGAGTGTTGGTGTTGGAAGTTTTGACAGGAAGAGCTACTTCCTCTCAGTACTCTTCTCCAATAGGAGTTCGTCCTTGTGTGGAATTCGAGGAAGAAGAAGTGGATCTTCCGAAATGGGTTAGATCCACTGTGAAGAAAGAGTGGACATCAGAGGTGTTTGATCAGGAACTTTTAAGGTACAAGAACATCGAAGAGGAGCTTGTTTCAATGCTAAATATAGCGCTTGCTTGTGTTGTGTCACAACCTGGGGAGAGGCCAACTATGTTGGAAGTTGTTAAGTTGATTGAGGATATTAGAGTGGAGCAATCTCCTCTAAGAGAGGATTATGATGAATCTCGCACTTCGCTTTCACCTTCACTCGCTACTACAGAAGATTGCCTAGCTTAA 2070 0.4517 MNIALPLALILACLCTLTHSAPQNDTHALTEFRLQTDFHGYLVSNWTGEDACNSVWHGVECSPNGRVVALSIPSLNLRGPVDSLSTLTYLRFLDLHDNRLNGTLVPLLNCTDLELLYLSSNDFSGKIPPEISSLRLLIRLDISDNNIHGEIPKEVSKLKFLLTFRLQDNELSGEVPDLSSSLLNLRELNITNNELQGRVPDAMLTKFGNKSFSGNDGLCGMTPLPNCPVIEAHSPPPSDDDGSETVPSNPSSMPKSSRNASGIIPSETPSSKRKMLSPGTIVAVTVAVSVALLVVVSFVVAQCCGRGGRSNSTVGMDSELGKRKSDSSSGSEKKGYIANSNNGGVDRDSDGTSEPERSKLVFFDRSNEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCDRNQFEQYMEVVGKLRHPNVVRLKAYYYAKEEKLLVYDYLSNGSLYSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSAAKIPHGNVKSSNVLLDRNGVACMGDFGLSLLLNPVHAVARLGGSRAPEQAETKKLSQEADVYGFGVLVLEVLTGRATSSQYSSPIGVRPCVEFEEEEVDLPKWVRSTVKKEWTSEVFDQELLRYKNIEEELVSMLNIALACVVSQPGERPTMLEVVKLIEDIRVEQSPLREDYDESRTSLSPSLATTEDCLA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03165 689 FunFam Nuclear pore complex protein NUP107 22 177 - -
Vifa5g03165 689 MobiDBLite consensus disorder prediction 667 689 - -
Vifa5g03165 689 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515
Vifa5g03165 689 Gene3D Ribonuclease Inhibitor 18 102 IPR032675 -
Vifa5g03165 689 MobiDBLite consensus disorder prediction 229 275 - -
Vifa5g03165 689 Gene3D Phosphorylase Kinase; domain 1 347 451 - -
Vifa5g03165 689 Gene3D Transferase(Phosphotransferase) domain 1 452 678 - -
Vifa5g03165 689 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 661 IPR046959 -
Vifa5g03165 689 MobiDBLite consensus disorder prediction 308 357 - -
Vifa5g03165 689 SUPERFAMILY L domain-like 23 204 - -
Vifa5g03165 689 Gene3D Ribonuclease Inhibitor 105 229 IPR032675 -
Vifa5g03165 689 Pfam Protein kinase domain 380 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03165 689 MobiDBLite consensus disorder prediction 241 275 - -
Vifa5g03165 689 ProSiteProfiles Protein kinase domain profile. 376 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03165 689 MobiDBLite consensus disorder prediction 331 348 - -
Vifa5g03165 689 FunFam pollen receptor-like kinase 1 346 451 - -
Vifa5g03165 689 SUPERFAMILY Protein kinase-like (PK-like) 380 656 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03165 Vifa-Chr5 1048242117 1048244273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03165 23 685 Receptor kinase-like Gene Family AT2G36570 62.370 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa5g03165 Pkinase 2.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03165 - - gmx:100808402 931.398