Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03161 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGAAAACCACTCAAGGTTGTTCCAGAAGAAGACAAGATTATCCATCTTTCATCGGCATGTCTGGGGGAGATCAGCAAGGATAAAGGGAAAGAACCAGTATCCCTTTATGTTAAGTTTGGTGATAAGAAAGTTCAACTTGGAACACTATCTTCAGAAAAATTTCCTCAGACATCTTATGATTTGGTGTTTGAGAAGGACTTCGAGCTATCCCATAACTGGAAATATGGAAGCGTCTTTTTTACTGGATATAATGATGATGAGGATGAAGATTCTGATGATTTTGATGAGGAAGATATTCCAATTAATGCTGCTGCCAATGGGAAACCTGAGTTTGAGGTGAAGAGTGGTGCCAAACCCCGTGTTAATGGAGCTAAACAAAAGAAAACATCAGATACAATAAAGAATGAGAAGGTTCATGAAAAGGATGTTAGTGATCAAGATGAAGCAGAATCATCTGAATCTGACTCTGATGAGGATTCTGGTGAAGAGAAGCCCACGACCAATGGACATATTGGAATTAGTGAAGATGACGAGGATAGCGATTCTGATGAGGAGGAGACACCGGCTAAGGTTGAAGGGAGCAGTAAGAGAGTTCATGAATCTTCAAAGAAAACTCCTGTGCCTGTGAAGAAGGCAAAGTTTGTTACTCCTGAGAAGACTGGTGGCCATAGTGGTGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTCTAAAAGCAGCTGCAAATAACAAGCAGCATACTCCAAAGTCAAATGGGAGGGATTACAGCTGCAAACCTTGTAACAGGTCATTTAAGTCTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCCAAGTGA 879 0.4164 MEFWGVEVKSGKPLKVVPEEDKIIHLSSACLGEISKDKGKEPVSLYVKFGDKKVQLGTLSSEKFPQTSYDLVFEKDFELSHNWKYGSVFFTGYNDDEDEDSDDFDEEDIPINAAANGKPEFEVKSGAKPRVNGAKQKKTSDTIKNEKVHEKDVSDQDEAESSESDSDEDSGEEKPTTNGHIGISEDDEDSDSDEEETPAKVEGSSKRVHESSKKTPVPVKKAKFVTPEKTGGHSGGVHVDTPYPKQALKAAANNKQHTPKSNGRDYSCKPCNRSFKSEDALGSHNKAKHSAK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03161 292 MobiDBLite consensus disorder prediction 95 292 - -
Vifa5g03161 292 MobiDBLite consensus disorder prediction 251 268 - -
Vifa5g03161 292 ProSitePatterns Zinc finger C2H2 type domain signature. 268 289 IPR013087 -
Vifa5g03161 292 Pfam C2H2-type zinc finger 266 290 - -
Vifa5g03161 292 MobiDBLite consensus disorder prediction 95 109 - -
Vifa5g03161 292 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Vifa5g03161 292 Gene3D Nucleoplasmin core domain 1 101 - -
Vifa5g03161 292 MobiDBLite consensus disorder prediction 197 217 - -
Vifa5g03161 292 MobiDBLite consensus disorder prediction 134 156 - -
Vifa5g03161 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 292 IPR013087 -
Vifa5g03161 292 MobiDBLite consensus disorder prediction 171 185 - -
Vifa5g03161 292 FunFam Histone deacetylase HDT1 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03161 Vifa-Chr5 1046320318 1046324322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03161 1 109 C2H2 Transcription Factor Family AT5G03740 51.818 6.94e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g03161 NPL 3.3e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03161 - - ccaj:109796568 339.732