Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03160 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGAAAACCACTCAAGGTTGTTCCAGAAGAAGACAAGATTATCCATCTTTCATCGGCATGTCTGGGGGAGATCAGCAAGGATAAAGGGAAAGAACCAGTATCCCTTTATGTTAAGTTTGGTGATAAGAAAGTTCAACTTGGAACACTATCTTCAGAAAAATTTCCTCAGACATCTTATGATTTGGTGTTTGAGAAGGACTTCGAGCTATCCCATAACTGGAAATATGGAAGCGTCTTTTTTACTGGATATAAATTCCAATCTGACGTGTCTGATGATGAGGATGAAGATTCTGATGATTTTGATGAGGAAGATATTCCAATTAATGCTGCTGCCAATGGGAAACCTGAGTTTGAGGTGAAGAGTGGTGCCAAACCCCGTGTTAATGGAGCTAAACAAAAGAAAACATCAGATACAATAAAGAATGAGAAGGTTCATGAAAAGGATGTTAGTGATCAAGATGAAGCAGAATCATCTGAATCTGACTCTGATGAGGATTCTGGTGAAGAGAAGCCCACGACCAATGGACATATTGGAATTAGTGAAGATGACGAGGATAGCGATTCTGATGAGGAGGAGACACCGGCTAAGGTTGAAGGGAGCAGTAAGAGAGTTCATGAATCTTCAAAGAAAACTCCTGTGCCTGTGAAGAAGGCAAAGTTTGTTACTCCTGAGAAGACTGGTGGCCATAGTGGTGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTCTAAAAGCAGCTGCAAATAACAAGCAGCATACTCCAAAGTCAAATGGGAGGGATTACAGCTGCAAACCTTGTAACAGGTCATTTAAGTCTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCCAAGTGA 897 0.4169 MEFWGVEVKSGKPLKVVPEEDKIIHLSSACLGEISKDKGKEPVSLYVKFGDKKVQLGTLSSEKFPQTSYDLVFEKDFELSHNWKYGSVFFTGYKFQSDVSDDEDEDSDDFDEEDIPINAAANGKPEFEVKSGAKPRVNGAKQKKTSDTIKNEKVHEKDVSDQDEAESSESDSDEDSGEEKPTTNGHIGISEDDEDSDSDEEETPAKVEGSSKRVHESSKKTPVPVKKAKFVTPEKTGGHSGGVHVDTPYPKQALKAAANNKQHTPKSNGRDYSCKPCNRSFKSEDALGSHNKAKHSAK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03160 298 MobiDBLite consensus disorder prediction 98 298 - -
Vifa5g03160 298 MobiDBLite consensus disorder prediction 99 115 - -
Vifa5g03160 298 MobiDBLite consensus disorder prediction 257 274 - -
Vifa5g03160 298 ProSitePatterns Zinc finger C2H2 type domain signature. 274 295 IPR013087 -
Vifa5g03160 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 298 IPR013087 -
Vifa5g03160 298 Pfam C2H2-type zinc finger 272 296 - -
Vifa5g03160 298 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Vifa5g03160 298 MobiDBLite consensus disorder prediction 140 162 - -
Vifa5g03160 298 MobiDBLite consensus disorder prediction 203 223 - -
Vifa5g03160 298 Gene3D Nucleoplasmin core domain 1 100 - -
Vifa5g03160 298 MobiDBLite consensus disorder prediction 177 191 - -
Vifa5g03160 298 FunFam Histone deacetylase HDT1 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03160 Vifa-Chr5 1046320318 1046324322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03160 1 109 C2H2 Transcription Factor Family AT5G03740 56.881 5.47e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g03160 NPL 3.3e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03160 - - ccaj:109796568 346.665