Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03148 ATGGAATCCAATGGAATTTTTCCTACAATAAACAATGGATTTATAGGTGTAGAAAACCCTTCAAAACAACAACAAAATTCTCATTCTCACACTTTGCATCATCATCATCATCACCAAATGGTTTCCTATGATCAACCACATCAATCAATAAAACAAACCTATCCTTCTTACTCATCAAAAACCATCAACAACAACAACAACAAACAAATCAACCTCAGCGATGAGGACGAGCCGTGTTTCGGAGCCGACGAAGCCTCTGGTGGTGACCCGAAGAGAAAAGGATCGCCATGGCATAGAATGAAATGGACAGATACAATGGTAAGGCTCTTAATAATGGCGGTTTATTACATCGGTGACGAAGCGGGTATTTCGGAGATAGGTGTTGATAATAAAAAGAAAGTGAGTGGCTTGTTACAGAAGAAAGGTAAATGGAAATCGGTTTCTAAAGGAATGATGGAGAAAGGATACTATGTTTCGCCTCAACAATGTGAAGACAAGTTCAATGATTTGAACAAAAGGTACAAAAGGGTTAATGATATTATCGGAAAAGGAACAGCTTGTAGGGTTGTTGAGAATCAAAGCTTGTTGGATAGTATGGATTTGTCTGCGAAACTTAAAGACGAAGCAAGAAAGCTTTTGAATTCTAAGCATCTTTTCTTTAGAGAAATGTGTGCTTATCATAATAGTTGCGGCCATGGGAACAACCCTTTGCAGCAGCAGCAACAGTCTTCGAACGAGACTCAACCCCAACAACAGCAGCAGCAACAACAGCCTCAGCAGCAGCAGGAACAACAATGTTTGCATTCATCGAATGCGGTGGGAATTTTAAAACTGAAAAGAAAAAGCGGAGGAGAAGAGGACGAGGATGAAGACGAAGAGGATGAATGGGAGGAGGATTCTGAGGAGGAGGAAGAAGAGTCCGGTGAAGATGAGAATAACGATAATTTGAGGAAGAAGTCGAGGAAGGTTTCGGGTTCGGTTTCATTAACGGTGATGATGCAACAGCTGAGTAGTGAAGTGATGAATGTGTTGCAAGATGGAGTGAAGAGTTGTTGGGAGAAGAAGCAATGGATGAAGAAGAGGGTTGTGCAGTTGGGAGAAGAAAAGGTGAACTATAATGTTGAAGCGTTTGAGATTGAGAAACAAAGGTTGAAATGGGAGAGGTTTAGTGGTAACAAAGAGAGGGACATGGAGAGACAGAAGCTTGAGAATGAAAGGAAGTGTTTGGAGATTGATAGAATGGTTTTGTTGCTTCGGCAGAAGGAGATTGAATTGGATAATACTCAGCAGATGCTGCAGCAACAGCAGCATTCTTCTACTTAG 1323 0.4112 MESNGIFPTINNGFIGVENPSKQQQNSHSHTLHHHHHHQMVSYDQPHQSIKQTYPSYSSKTINNNNNKQINLSDEDEPCFGADEASGGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGISEIGVDNKKKVSGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDIIGKGTACRVVENQSLLDSMDLSAKLKDEARKLLNSKHLFFREMCAYHNSCGHGNNPLQQQQQSSNETQPQQQQQQQQPQQQQEQQCLHSSNAVGILKLKRKSGGEEDEDEDEEDEWEEDSEEEEEESGEDENNDNLRKKSRKVSGSVSLTVMMQQLSSEVMNVLQDGVKSCWEKKQWMKKRVVQLGEEKVNYNVEAFEIEKQRLKWERFSGNKERDMERQKLENERKCLEIDRMVLLLRQKEIELDNTQQMLQQQQHSST 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03148 440 PANTHER F16F4.11 PROTEIN-RELATED 8 429 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 234 324 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 234 271 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 43 73 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 1 27 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 1 96 - -
Vifa5g03148 440 Coils Coil 392 438 - -
Vifa5g03148 440 MobiDBLite consensus disorder prediction 286 310 - -
Vifa5g03148 440 Coils Coil 286 313 - -
Vifa5g03148 440 Pfam Myb/SANT-like DNA-binding domain 99 225 IPR044822 -
Vifa5g03148 440 Gene3D - 102 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03148 Vifa-Chr5 1043188632 1043189954 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g03148 Myb_DNA-bind_4 8.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03148 - - gmx:547619 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03148 5 1043188632 1043189954 Vifa5g03148 5 1043188632 1043189954 ECH
Vifa5g03148 5 1043188632 1043189954 Vifa3g00973 3 237712755 237714284 PCT