Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03147 ATGACGAAACTCCATGTTCTGCCCCTCTCTCAACCTTCCATACACCTCCTTCAATTTCACTACCAACCTATCACTAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGATATTCATCTGTTGTTCTCGGAAGAGGGTGTGTTGGAAAGGTATTCCATTCATTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTATCAGCCCTCAAAAGGTACAACAATACGAGGTTTGATGGAAAGCCACTGCAAATTGAGCTTATTGGAATTGGAACAAGCATTATTACTCCTGCCAATAAGCAAATTGGAAAAAGCTCTATTACTCCTGCTGATACTCCTCTTGGTCAAAGCAGCATACTGGGAAGAACAAATGATCGCGTCTTTGCAAGGGAAGAAAGGAAGATTGGAGGTATCAGGTTCCATAACAGCTTTGCACATGGCTATCTTCCAATGGGCCATGGAAAAGAGAAGTTCCATATAAGGAAAGTGTCTCTTGGAGCTACTGATCCCAACTTCGAGAGTTATGACCGCCGTCGTGTAGAAACAAAACGCAATTTCCAAAAGTTGTCTGTGAAAGATCTTGATGAAGATCTGGATAAGTATCACTTAGAGGCTAAGAAGATTAACAAAAAAAATGGAAAGGGAAATCAGAACTGA 693 0.4084 MTKLHVLPLSQPSIHLLQFHYQPITKLYLSNLDDRVSNEDIHLLFSEEGVLERYSIHYDQFGRSKGTAEVVFTRQSDALSALKRYNNTRFDGKPLQIELIGIGTSIITPANKQIGKSSITPADTPLGQSSILGRTNDRVFAREERKIGGIRFHNSFAHGYLPMGHGKEKFHIRKVSLGATDPNFESYDRRRVETKRNFQKLSVKDLDEDLDKYHLEAKKINKKNGKGNQN 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03147 230 Gene3D - 20 100 IPR012677 -
Vifa5g03147 230 SMART rrm1_1 26 98 IPR000504 GO:0003723
Vifa5g03147 230 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 24 217 - -
Vifa5g03147 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 95 IPR000504 GO:0003723
Vifa5g03147 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 98 IPR000504 GO:0003723
Vifa5g03147 230 Coils Coil 203 223 - -
Vifa5g03147 230 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03147 Vifa-Chr5 1043104722 1043106038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03147 27 99 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 2.70e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03147 K12881 - gmx:100785926 201.445