Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03144 ATGGATTGGAATACTGAGAGCACAACACCCTTTGTTCCTCATCCAGACTCTTCTTTAAGCTTCTTCTACAACTATAGCAACAACAACCCTTATTCAGGGATGGAAGCGAGTGAAATGGCATTGGGTGAGAGACAACAAAGGTTTGTTCATGTAATGGATGATGAAATGAACATGATTAATAATGGTTACGGAGAGAAGAAGAAGAGGAAACTGACAAGTAACCAGATTAATTACCTGGAGAGGTGTTTTCAAGAAGATATAAAGTTAGATTCTAAAAGGAAAATGAATCTTTCAAGAGAGTTAGGGCTTCAACCTCGCCAAATTACTGTTTGGTTTCAAAATAGGCGTACTAGGTTGAAGACTAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAAAATCAGAAACTTCAAAAAGAGGTTATGGAGTTGAAGGAAAAACTAAAAGAGAAAGCTCATTTTAGGACACAGACATATGGTGAAGAGACAATTGAAAACATAGAAGGTATGCCATTCAGAAATACAGAAGGAGAGCCATATCCATGTTTCAATATGACACAAGCAACAACAAGTAGTATTCAACAAGCTGCAGAGGGATATGACTACAGTTTTTTTAATGTTGAAGATTTTGACTCAGTTTCATTGTTTCACGAGTGTCAATGGCCTAAGTTACCTTATTATCCATAA 690 0.3638 MDWNTESTTPFVPHPDSSLSFFYNYSNNNPYSGMEASEMALGERQQRFVHVMDDEMNMINNGYGEKKKRKLTSNQINYLERCFQEDIKLDSKRKMNLSRELGLQPRQITVWFQNRRTRLKTKQLEHSYDVLKQENQKLQKEVMELKEKLKEKAHFRTQTYGEETIENIEGMPFRNTEGEPYPCFNMTQATTSSIQQAAEGYDYSFFNVEDFDSVSLFHECQWPKLPYYP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03144 229 CDD homeodomain 66 123 IPR001356 GO:0003677
Vifa5g03144 229 Gene3D - 62 130 - -
Vifa5g03144 229 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Vifa5g03144 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 151 IPR045224 GO:0003700
Vifa5g03144 229 SMART HOX_1 65 126 IPR001356 GO:0003677
Vifa5g03144 229 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Vifa5g03144 229 Coils Coil 121 155 - -
Vifa5g03144 229 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Vifa5g03144 229 CDD bZIP 115 150 - -
Vifa5g03144 229 SUPERFAMILY Homeodomain-like 50 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03144 Vifa-Chr5 1041297758 1041298781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03144 8 164 Homeobox Transcription Factor Family AT2G36610 40.323 3.42e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa5g03144 Homeodomain 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03144 - - ccaj:109798071 166.392