Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03138 ATGACTATTACTAGACTACCCGTTGTTTATAAGCAGAAAGCATTCTATCTCTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCCATACTAAAGATTCCATTTTCAGTCCTTGATTCTCTTGTTTGGACATCAATAACATATTATGTTATAGGCTACAACCCAGAAATAACAAGGTTCCTCCTCCAGTTCCTTTTGCTTATCGCTCTGCACATGTCATCAACCTCTATGTGTCGTTCCCTTGCTGCCGTTTTTAAAACTGATGTTGCAGCTACAACTGTTGGTTCTTTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTACCAAAGTGGTTGAGGTGGGGTTTTTGGCTTTCTCCCATGTCATATGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCTCGCTGGAAAAAGATTCAAGAGGGAAACATCACCGTTGGAAGAGAGGTTCTCAAGAGTCGTGGTTTAGACTTTGATAGCAACTTTTTCTGGATATCAATTGCAGCATTACTTGGTTTCGCAGTAGTATTTGATATCCTATTTGTAGTAGCATTAACTTACTTAAAAGAGCCAAAGCAATCTCGAGCTTTAGAAGCTCAAAGCACAGGGAAAATGGTCTTGCCCTTTTTGCCACTGTCAATAGCATTTAAGGATGTCCAGTATTTTGTTGACACTCCTCCGGCCAGGAATCCTTACTGCTTTGATGAGAGTCAGTGGAGAAGGAAAGACAACACTCATGGACGTTACTGTGAGCAGAACGACATACATTCTCCATATATAACATTTGAAGAATCTGTTCGATACTCAGCTTGGTTGCGGTTGCCAAGCGAGATTGATTCAGCTACAAAAGGGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAACTTAGTTGGTATCGCTGGTCAAAGTGGCTTATCTACCGAGCAACGTAAAAGGCTAACTATAGCAGTAGAGCTTGTATCCAATCCTTCAATAATTTTTATGGATGAACCTACATCTGGTTTGGATGCCCGAGCTACTGCTGTAGTTATGCGTGCAGTGAAGAATGCTGTTGGCACTGGTAGGACCACAGTTTGCACCATACATCAGCCAAGCATCGATATATTTGAAACTTTTGATGAGTTGATTCTAATGAAATCTGGAGGCAAGATCATTTATAATGGAATGCTAGGCCATCATTCAAATAGACTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAGGACAATTATAATCCTGCAACCTGGATGTTGGAAGCTACTTCTGCATCTGTAGAAAAGGCAGAGATTAATTCTTTGAAACAAGCCCACAGTGAAGAGGTCTCTACATTAAGGGACGAGTTTCAAGATAAGATTGATAGATTGCAAAATGCTTTTAAGATCGTAATACAACAATGCAATCCTCAAATTAATATAGAGTCAATTAAAGATTTGTTAGGATTATCTCATGGAGATGCTAATAGTTCCCCAAAGGATATAAGACCGCAAATGCATTCATCTACATCAACTCATGCTCCATGTCATGGAAAGCAATGTATCAATGAAGATGTTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGACGACGACCTAAATGATAAAATTCAAGAGGACGACGTAGATGACGAATTTCAAGAGGACGACATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTATGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 1875 0.3893 MTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSITYYVIGYNPEITRFLLQFLLLIALHMSSTSMCRSLAAVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSYGEIGITLNEFLAPRWKKIQEGNITVGREVLKSRGLDFDSNFFWISIAALLGFAVVFDILFVVALTYLKEPKQSRALEAQSTGKMVLPFLPLSIAFKDVQYFVDTPPARNPYCFDESQWRRKDNTHGRYCEQNDIHSPYITFEESVRYSAWLRLPSEIDSATKGKFVEEVLETIELDDIKDNLVGIAGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARATAVVMRAVKNAVGTGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGMLGHHSNRLIEYFQSIPGVPKIKDNYNPATWMLEATSASVEKAEINSLKQAHSEEVSTLRDEFQDKIDRLQNAFKIVIQQCNPQINIESIKDLLGLSHGDANSSPKDIRPQMHSSTSTHAPCHGKQCINEDVEKDDINDEIQEDDINDKIQDDDLNDKIQEDDVDDEFQEDDIDLDDEFQEEDIDGEFQEDDVDEEFMEDDISNEFQEDDLDALLLEDKLE 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03138 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 403 IPR027417 -
Vifa5g03138 624 Pfam ABC-2 type transporter 377 452 IPR043926 GO:0140359
Vifa5g03138 624 Pfam ABC transporter 246 348 IPR003439 GO:0005524
Vifa5g03138 624 Coils Coil 609 624 - -
Vifa5g03138 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 142 421 IPR003439 GO:0005524
Vifa5g03138 624 FunFam Uncharacterized protein 325 397 - -
Vifa5g03138 624 Coils Coil 456 483 - -
Vifa5g03138 624 MobiDBLite consensus disorder prediction 510 526 - -
Vifa5g03138 624 MobiDBLite consensus disorder prediction 506 527 - -
Vifa5g03138 624 PANTHER ATP-BINDING CASSETTE TRANSPORTER 257 446 - -
Vifa5g03138 624 Pfam ABC-2 type transporter 2 139 IPR013525 GO:0016020|GO:0140359
Vifa5g03138 624 MobiDBLite consensus disorder prediction 565 584 - -
Vifa5g03138 624 Pfam Plant PDR ABC transporter associated 144 204 IPR013581 -
Vifa5g03138 624 Gene3D - 230 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03138 Vifa-Chr5 1040509103 1040513113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03138 302 380 Calmodulin-binding Proteins AT2G36910 37.975 8.85e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03138 K08711 - psom:113346986 567.385