Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03137 ATGGATTGGAATATTATTGACAACACAAAACCCTTTGTTCCTCTTCCTGACTCTTCCTTAAGCTTCTTCTACAACAACAACAACAACAACCCTTATTCAGGAATGGAAGTGGGTGCATTAGGTGAAACACATCAGAGGTTGCTTCCAGCAATGGATGAAATGAACATTAATGGAAATAATTACAAAGAGAAGAAGAAGAGGTTAACAAGCAACCAGATTGATTTGCTGGAGAGGTGTTTCCAAGAGGAAATAAAGTTAGAGCCTGAAAGGAAAATGAAGCTTTCAAGAGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTCTGGTTTCAAAACAGGCGTACTAGGTGGAAGACAAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAATTTGATGCTGTTTTCAAAGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAAGGAAAGCTAAAAGAACAAGCTAACTTCAGGACACAATCATCATATATTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGATGTTCCAACAAACCACAAGGAACAGCAGATCAAGGATTCATCAACAACAACAATAACAACAGTAGTACTTGTTTCACAGTTGAAGATTTTAATTCAGTTTCAATGCCTCCTCATCAATGTCACTGGCCTGTGTTACCTTATTATCCCTAA 684 0.3772 MDWNIIDNTKPFVPLPDSSLSFFYNNNNNNPYSGMEVGALGETHQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERCFQEEIKLEPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHSYDVLKQEFDAVFKEKQKLQEEVMKLKGKLKEQANFRTQSSYIEETVESTSEGLRCSNKPQGTADQGFINNNNNNSSTCFTVEDFNSVSMPPHQCHWPVLPYYP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03137 227 FunFam Putative homeobox-leucine zipper protein ATHB-51 61 124 - -
Vifa5g03137 227 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Vifa5g03137 227 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Vifa5g03137 227 Gene3D - 57 129 - -
Vifa5g03137 227 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Vifa5g03137 227 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Vifa5g03137 227 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Vifa5g03137 227 SMART HOX_1 62 123 IPR001356 GO:0003677
Vifa5g03137 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 195 IPR045224 GO:0003700
Vifa5g03137 227 CDD homeodomain 62 120 IPR001356 GO:0003677
Vifa5g03137 227 Coils Coil 51 71 - -
Vifa5g03137 227 Coils Coil 125 159 - -
Vifa5g03137 227 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Vifa5g03137 227 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03137 Vifa-Chr5 1039910095 1039912230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03137 1 149 Homeobox Transcription Factor Family AT5G03790 50.307 7.90e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa5g03137 Homeodomain 6.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03137 - - gmx:100807872 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03137 5 1039910095 1039912230 Vifa5g03137 5 1039910095 1039912230 ECH
Vifa3g00972 3 236993688 236994874 Vifa5g03137 5 1039910095 1039912230 PCT