Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03136 ATGGATTGGAATATTATTGACAACACAAAACCCTTTGTTCCTCTTCCTGACTCTTCCTTAAGCTTCTTCTACAACAACAACAACAACAACCCTTATTCAGGTGGGTCTTGTTTGTGTTGGAAAATTATAGGAATGGAAGTGGGTGCATTAGGTGAAACACATCAGAGGTTGCTTCCAGCAATGGATGAAATGAACATTAATGGAAATAATTACAAAGAGAAGAAGAAGAGGTTAACAAGCAACCAGATTGATTTGCTGGAGAGGTGTTTCCAAGAGGAAATAAAGTTAGAGCCTGAAAGGAAAATGAAGCTTTCAAGAGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTCTGGTTTCAAAACAGGCGTACTAGGTGGAAGACAAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAATTTGATGCTGTTTTCAAAGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAAGGAAAGCTAAAAGAACAAGCTAACTTCAGGACACAATCATCATATATTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGATGTTCCAACAAACCACAAGGAACAGCAGATCAAGGATTCATCAACAACAACAATAACAACAGTAGTACTTGTTTCACAGTTGAAGATTTTAATTCAGTTTCAATGCCTCCTCATCAATGTCACTGGCCTGTGTTACCTTATTATCCCTAA 714 0.3768 MDWNIIDNTKPFVPLPDSSLSFFYNNNNNNPYSGGSCLCWKIIGMEVGALGETHQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERCFQEEIKLEPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHSYDVLKQEFDAVFKEKQKLQEEVMKLKGKLKEQANFRTQSSYIEETVESTSEGLRCSNKPQGTADQGFINNNNNNSSTCFTVEDFNSVSMPPHQCHWPVLPYYP 237
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03136 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 205 IPR045224 GO:0003700
Vifa5g03136 237 Gene3D - 67 139 - -
Vifa5g03136 237 CDD homeodomain 72 130 IPR001356 GO:0003677
Vifa5g03136 237 Pfam Homeobox associated leucine zipper 129 163 IPR003106 GO:0006355|GO:0043565
Vifa5g03136 237 Coils Coil 61 81 - -
Vifa5g03136 237 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Vifa5g03136 237 Coils Coil 135 169 - -
Vifa5g03136 237 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Vifa5g03136 237 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Vifa5g03136 237 SUPERFAMILY Homeodomain-like 61 131 IPR009057 -
Vifa5g03136 237 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Vifa5g03136 237 Pfam Homeodomain 72 127 IPR001356 GO:0003677
Vifa5g03136 237 SMART HOX_1 72 133 IPR001356 GO:0003677
Vifa5g03136 237 FunFam Putative homeobox-leucine zipper protein ATHB-51 71 134 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa5g03136 Vifa-Chr5 1039910095 1039912230 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03136 1 159 Homeobox Transcription Factor Family AT5G03790 48.795 1.61e-38 130
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa5g03136 Homeodomain 6.9e-16 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03136 - - gmx:100807872 236.884