Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g03136 | ATGGATTGGAATATTATTGACAACACAAAACCCTTTGTTCCTCTTCCTGACTCTTCCTTAAGCTTCTTCTACAACAACAACAACAACAACCCTTATTCAGGTGGGTCTTGTTTGTGTTGGAAAATTATAGGAATGGAAGTGGGTGCATTAGGTGAAACACATCAGAGGTTGCTTCCAGCAATGGATGAAATGAACATTAATGGAAATAATTACAAAGAGAAGAAGAAGAGGTTAACAAGCAACCAGATTGATTTGCTGGAGAGGTGTTTCCAAGAGGAAATAAAGTTAGAGCCTGAAAGGAAAATGAAGCTTTCAAGAGAGTTAGGGCTTCAACCTCGTCAAATTGCTGTCTGGTTTCAAAACAGGCGTACTAGGTGGAAGACAAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAATTTGATGCTGTTTTCAAAGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAAGGAAAGCTAAAAGAACAAGCTAACTTCAGGACACAATCATCATATATTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGATGTTCCAACAAACCACAAGGAACAGCAGATCAAGGATTCATCAACAACAACAATAACAACAGTAGTACTTGTTTCACAGTTGAAGATTTTAATTCAGTTTCAATGCCTCCTCATCAATGTCACTGGCCTGTGTTACCTTATTATCCCTAA | 714 | 0.3768 | MDWNIIDNTKPFVPLPDSSLSFFYNNNNNNPYSGGSCLCWKIIGMEVGALGETHQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERCFQEEIKLEPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHSYDVLKQEFDAVFKEKQKLQEEVMKLKGKLKEQANFRTQSSYIEETVESTSEGLRCSNKPQGTADQGFINNNNNNSSTCFTVEDFNSVSMPPHQCHWPVLPYYP | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g03136 | 237 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 69 | 205 | IPR045224 | GO:0003700 | |
Vifa5g03136 | 237 | Gene3D | - | 67 | 139 | - | - | |
Vifa5g03136 | 237 | CDD | homeodomain | 72 | 130 | IPR001356 | GO:0003677 | |
Vifa5g03136 | 237 | Pfam | Homeobox associated leucine zipper | 129 | 163 | IPR003106 | GO:0006355|GO:0043565 | |
Vifa5g03136 | 237 | Coils | Coil | 61 | 81 | - | - | |
Vifa5g03136 | 237 | ProSiteProfiles | 'Homeobox' domain profile. | 69 | 129 | IPR001356 | GO:0003677 | |
Vifa5g03136 | 237 | Coils | Coil | 135 | 169 | - | - | |
Vifa5g03136 | 237 | PRINTS | Lambda-repressor HTH signature | 109 | 125 | IPR000047 | GO:0003677 | |
Vifa5g03136 | 237 | PRINTS | Lambda-repressor HTH signature | 100 | 109 | IPR000047 | GO:0003677 | |
Vifa5g03136 | 237 | SUPERFAMILY | Homeodomain-like | 61 | 131 | IPR009057 | - | |
Vifa5g03136 | 237 | ProSitePatterns | 'Homeobox' domain signature. | 104 | 127 | IPR017970 | GO:0000981|GO:0006355 | |
Vifa5g03136 | 237 | Pfam | Homeodomain | 72 | 127 | IPR001356 | GO:0003677 | |
Vifa5g03136 | 237 | SMART | HOX_1 | 72 | 133 | IPR001356 | GO:0003677 | |
Vifa5g03136 | 237 | FunFam | Putative homeobox-leucine zipper protein ATHB-51 | 71 | 134 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g03136 | Vifa-Chr5 | 1039910095 | 1039912230 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g03136 | 1 | 159 | Homeobox Transcription Factor Family | AT5G03790 | 48.795 | 1.61e-38 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vifa5g03136 | Homeodomain | 6.9e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g03136 | - | - | gmx:100807872 | 236.884 |