Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03135 ATGGTTCTCAAGACTGAACTCTGCCGATTCAGTGGTGCAAAGATATACCCCGGAAGAGGCATCAGATTTATTCGAAGTGATTCACAGGTTTTTCTATTTGTGAACTCAAAATGTAAGAGGTATTTCCACAACCGTTTGAAGCCTTCAAAGCTCACATGGACTGCCATGTACAGAAAGCAGCACAAGAAGGACATTGCACAAGAAGCTGCGAAGAAGAGACGCCGTGCTACCAAGAAGCCATACTCTAGGTCTATTGTTGGTGCTACCCTGGAAGTCATTCAGAAGAAAAGAGCCGAGAAGCCTGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTGCGTGAAATCAAAGAGAGGATTAAGAAAACAAAGGATGAGAAGAAAGCCAAGAAAGCAGAAGTAGCATCTAAGGCCCAAAAATCAGGCAAAAGCAATGTTCAGAAAGGAGGTTTGCCCAAGGGTCCTAAATTGGGCGGCGGTGGCGGTAAACGCTGA 492 0.4573 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAAKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSGKSNVQKGGLPKGPKLGGGGGKR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03135 163 Gene3D - 69 139 - -
Vifa5g03135 163 Coils Coil 112 139 - -
Vifa5g03135 163 SMART 4TRASH 8 46 IPR011017 -
Vifa5g03135 163 FunFam 60S ribosomal protein L24 3 64 - -
Vifa5g03135 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vifa5g03135 163 PANTHER 60S RIBOSOMAL PROTEIN L24 4 147 IPR000988 -
Vifa5g03135 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vifa5g03135 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vifa5g03135 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vifa5g03135 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vifa5g03135 163 MobiDBLite consensus disorder prediction 118 136 - -
Vifa5g03135 163 MobiDBLite consensus disorder prediction 64 83 - -
Vifa5g03135 163 MobiDBLite consensus disorder prediction 118 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03135 Vifa-Chr5 1039885816 1039887929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03135 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 86.624 3.18e-86 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03135 K02896 - twl:120012240 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03135 5 1039885816 1039887929 Vifa5g03135 5 1039885816 1039887929 ECH
Vifa5g03135 5 1039885816 1039887929 Vifa3g00970 3 236622922 236623989 PCT