Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03134 | ATGGTTCTCAAAACTGAACTCTGCCGATTCAGCGGTGCAAAGATCTACCCGGGAAGAGGCATCAGATTTATTCGTAGTGATTCTCAGGTGTTCCTCTTCGTGAACTCGAAATGTAAGAGGTATTTTCACAACCGCTTGAAGCCTTCAAAGCTCACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATATTGCTCAAGAAGCTGTAAAGAAGCGACGCCGTGCTAACAAGAAGCCATACTCTAGGTCCATTGTTGGTGCTACACTGGAAGTCATACAGAAGAAAAGAGCTGAGAAGCCTGAAGTTAGAGATGCAGCCAGGGAAGCTGCTCTGCGTGAAATCAAAGAGAGGATTAAGAAAACAAAGGATGAGAAGAAAGCCAAGAAAGCAGAAGTAGCATCAAAGGCCCAAAAGTCAGGCAAAGGCAATGTCCAAAAAGGAGGTTTGCCCAAGGGTCCAAAATTGGGCGGTGGCGGCGGCAAACGTTAA | 492 | 0.4614 | MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRANKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSGKGNVQKGGLPKGPKLGGGGGKR | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03134 | 163 | Gene3D | Ribosomal protein L24e | 3 | 64 | IPR038630 | - | |
| Vifa5g03134 | 163 | CDD | Ribosomal_L24e_L24 | 3 | 56 | IPR000988 | - | |
| Vifa5g03134 | 163 | Gene3D | - | 69 | 140 | - | - | |
| Vifa5g03134 | 163 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 58 | - | - | |
| Vifa5g03134 | 163 | ProSitePatterns | Ribosomal protein L24e signature. | 10 | 27 | IPR023442 | - | |
| Vifa5g03134 | 163 | Coils | Coil | 112 | 139 | - | - | |
| Vifa5g03134 | 163 | Pfam | Ribosomal protein L24e | 4 | 67 | IPR000988 | - | |
| Vifa5g03134 | 163 | SMART | 4TRASH | 8 | 46 | IPR011017 | - | |
| Vifa5g03134 | 163 | MobiDBLite | consensus disorder prediction | 118 | 136 | - | - | |
| Vifa5g03134 | 163 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 4 | 148 | IPR000988 | - | |
| Vifa5g03134 | 163 | MobiDBLite | consensus disorder prediction | 118 | 163 | - | - | |
| Vifa5g03134 | 163 | FunFam | 60S ribosomal protein L24 | 3 | 64 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa5g03134 | Vifa-Chr5 | 1039826464 | 1039827732 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03134 | 1 | 156 | Cytoplasmic Ribosomal Protein Gene Family | AT2G36620 | 87.261 | 2.76e-87 | 251 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03134 | K02896 | - | twl:120012240 | 240.736 |