Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03115 ATGGACACAGTGTTGGTGCCGCCATGGCTTGAACCATTGCTGAAAACACCGTTTTTCAACATGTGTCGGATTCACGCCGATGCGGCTAGGAATGAGTGTAACATGTATTGTTTAGACTGCAACAATGGCGATGGTGCCTTCTGCTTTTATTGCCGTTCTTCAAGACACAAAGACCATCCAGTCATTCAGATAAGAAGATCATCCTATCACGATGTAGTGAGGGTGTCAGAGATTCAGAAAGTATTGGACATAAGTGGAGTACAAACCTATGTGATAAACAGTGCTAGAGTTTTGTTCTTGAATGTCAGGCCTCAACCAAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGACTCTCTTGGATTCATTTAGGTTCTGTTCTTTGGGATGTAAGCTTGAAAGAATAAAGAAAAATGGAGATGCAAGCTTTGCAATGGACGGGGGTAAGAATGAAGCAATGAGAATGGAGGGGGTATCAAGTAGTAGATCAGAAGAAGAATTGCGTGAAGGCTCAACACAAGATATGTATCCTGTCACGCCTCCTCCACCTCCTTTAAATGCAAGAAGAAGAAAAGGTATTCCTCATAGGGCACCTTTTGGTTCTTCATTCTAA 624 0.4247 MDTVLVPPWLEPLLKTPFFNMCRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRTLLDSFRFCSLGCKLERIKKNGDASFAMDGGKNEAMRMEGVSSSRSEEELREGSTQDMYPVTPPPPPLNARRRKGIPHRAPFGSSF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03115 207 MobiDBLite consensus disorder prediction 160 207 - -
Vifa5g03115 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 203 - -
Vifa5g03115 207 Pfam PLATZ transcription factor 65 136 IPR006734 -
Vifa5g03115 207 SUPERFAMILY B-box zinc-binding domain 19 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03115 Vifa-Chr5 1033486639 1033488543 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa5g03115 PLATZ 9.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03115 - - psat:127125735 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03115 5 1033486639 1033488543 Vifa5g03115 5 1033486639 1033488543 ECH
Vifa5g03115 5 1033486639 1033488543 Vifa3g00949 3 231866683 231867812 PCT