Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03113 ATGATGGAGCATAAAAGGAGCATTTGCTCTGTTGATCAAAGCAATTATAATTCCATTGCATCTAAAAAGCAAAAGCCTGATTTATCGATCACCACTAAGGATAGGAAGGAAAAGATTGGCGAACGAATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCGATGGAATACATAGGGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTCGAAACTACACCAGCAATCCAGATGCAGGATACAGAGTCATGCAGCCTTAGGAGTAGAGGGTTATGTCTTTTTCCTGTCTCATTTACTATTGGAGTTGCTGAGGGCAATGGTGCAGACATTTGGGCTCCGATCAAGACCACTTCGCCTGATTCTGAGAAAGATGTTTCTCAAATTCAGTGA 432 0.4144 MMEHKRSICSVDQSNYNSIASKKQKPDLSITTKDRKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETTPAIQMQDTESCSLRSRGLCLFPVSFTIGVAEGNGADIWAPIKTTSPDSEKDVSQIQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03113 143 Gene3D - 20 94 IPR036638 GO:0046983
Vifa5g03113 143 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 113 - -
Vifa5g03113 143 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 90 IPR036638 GO:0046983
Vifa5g03113 143 FunFam Transcription factor bHLH113 family 22 98 - -
Vifa5g03113 143 CDD bHLH_AtbHLH_like 29 80 IPR045239 -
Vifa5g03113 143 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03113 Vifa-Chr5 1031630752 1031631863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03113 1 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 51.974 1.58e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03113 - - gmx:100809747 236.498