Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03109 ATGTTAACCGTTGCCGAAACTTTCTCCTTTTCTGCTTCTCTTCTTAAGCCTAAAACAATTGATATTGCTTCCATTGTTTCATCTCTTTTGAATGAGCTTAGACTAACACATTTGGCTAACACAAGGCTTAATCATGGTTTATCTGGTGGTGAACATAGAAGGGTCTCTATAGGACTTAGTCTTCTTCATGATCCTGCAGTTTTGTTACTTGATGAACCTACTTCTGGTCTTGATAGTTCATCTGCTTTCAAAGTCAAACAAACACACCAATCAACTAAGCATTTTCCCATTCTGTCATTTCATCAAACAGATAGTCCATTCGCAATAACTCCACACAAAGTATCCCTCTGCATACTCTTCAAGATCTACGCTCCTCCATCTCAAACTTCAGTTCCTTTCCCTTTCACTTCCGTCTCACAACACAAGTCTCGGTCACCGCCGGCCCAGACTCAGCCTCGTGATGAGGTAACGAATTCAAGAGGAGCTGAAATGATGAATGAAGAGGATGATTCCATTATGAAGATGAAGGCTGCTGAAGAGGATTTGGAAGAAAAACAGAAGGTAAAACCTTCTTTTGAGCTATCAGGAAAACTTGCAGCTGAAACAAATCGAGTCAGAGGTATTACTTTATTATTCAACGAACCACCGGAGGCACGAAAACCTGATATTAAATGGAGGCTCTATGTTTTCAAGACTGGTGAAATGTTGAATGAGCCCCTATACATACATCGCCAAAGTTGTTACCTATTTGGAAGGGAAAGAAGGGTTGCTGATGTCCCAACAGATCATCCCTCTTGCAGCAAGCAACATGCTGTTATTCAATTTCGGCAAATTGAAAAGGAATAA 846 0.4054 MLTVAETFSFSASLLKPKTIDIASIVSSLLNELRLTHLANTRLNHGLSGGEHRRVSIGLSLLHDPAVLLLDEPTSGLDSSSAFKVKQTHQSTKHFPILSFHQTDSPFAITPHKVSLCILFKIYAPPSQTSVPFPFTSVSQHKSRSPPAQTQPRDEVTNSRGAEMMNEEDDSIMKMKAAEEDLEEKQKVKPSFELSGKLAAETNRVRGITLLFNEPPEARKPDIKWRLYVFKTGEMLNEPLYIHRQSCYLFGRERRVADVPTDHPSCSKQHAVIQFRQIEKE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03109 281 MobiDBLite consensus disorder prediction 136 166 - -
Vifa5g03109 281 PANTHER NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 147 276 - -
Vifa5g03109 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 106 IPR027417 -
Vifa5g03109 281 Gene3D - 1 113 IPR027417 -
Vifa5g03109 281 Gene3D - 209 281 - -
Vifa5g03109 281 MobiDBLite consensus disorder prediction 136 157 - -
Vifa5g03109 281 Pfam ABC transporter 26 75 IPR003439 GO:0005524
Vifa5g03109 281 SUPERFAMILY SMAD/FHA domain 214 276 IPR008984 GO:0005515
Vifa5g03109 281 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03109 Vifa-Chr5 1029875935 1029876843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03109 47 81 Calmodulin-binding Proteins AT2G36910 57.143 4.40e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03109 K13108 - gmx:100812104 252.292