Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03103 ATGGATGCATCTGTGGAGCCAGAATCGGAATCCACAACCGTTTTGCTTGATCAGGAAATGGAAACAGTGAATGGTTGCATTGTTTACACTCGAGTTAAAAGATCTCTCAATCCGTGTATTAGTATTTCCGAGGATGTTGATTGCAAGAAATTCAGGGAAGATGCGGAGGTGCCGATTGAATTGGATAACGGAGTCGGCGAGTGCGGTGATAAGACTACGTTCAAGCGGATTACAAGATCTGCTATGAAAGCGAAAGCTGAGAATTTCAAGCGGATTACACGATCTGCTATGAAAGTGAAAATTGAGTCCGGTGGGAAGAAGGTGTCTGTGTTAGAACAAAGAGGTGCTGCCGTTGTAAGTGGTAAAGGCGTTGGTGTGGTGCCAGTGAGAAATTTGAAGCGGTTTTCACGTTCGACTAAGAAAGAAAAGGCTGAATCCTGTGAAGATAAGGTGACTGTGGTAGAACAACAAGGTGCTGTAGTTGTTAGTGGCAAGAGCAATGGTGTGGTGCCAGTGAAAAATTCGAAGCGGTATACACGATCAGCATTGAAAGAAAAGGGTGATTCCTGTGAAGAGAATGTGACTGTGGTAGAACAACATGGTGCTGCAGTTGTAAGTGCTAAAGGCGATGGTTCGGTACCAGTGAAAAATTTGAAGCGGTTTACGCGATCAACAATGAAAGAAAAGGGGGAGTCCTGTGAAGAGACGGGGAATGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGCTAAGCGAATTAGAAGATCGGCGGTGAAAGTGACGGCTGAATCCGGTGAGGAGACAGTGACTGAGTTAGCACAGCAGGGTGCTGCCGTTGCAAATGGTGAAAGTTCAGTGAGGATGTTCAAGCGGATTACACGATCGGCTTCCATGAAAGGAAATCCTGAGTCCGGTGAGGAAACGGGGACCAAGTTAGAACAAAAAAGGGCTGCCATTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTGAAGATGTCGAAGAAGATCGTGGTTAATAAGAAGCCTACAACAGTCAAAGAGCTCTTCCATACCGGTTTACTTGATGGCGTCTCCGTGGTTTACATGGGCGGCCTTAAGAAGGCTCCAGGATTAAGGGGTGTTATAAGAAATGGGGGAATATTGTGCTCGTGCTGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAAGAGATCAGTAGAGTATATATGCCTTGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCGTGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTTGCTTTCCACCTGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGAAGTTTCCCTTCTTCATGTATGGAAGGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCATGTAAACCTGAAGAAAGTTCGAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTAGGCCAGTGCTGGTCTCCAAGTCATCTTGTGCTTCTGAGCTGTCAATTTCTTCAAAAAGTAAGAGACATGGGAAGAAAAGAACAGAGTCATCAAAAAGGGACAACAGCTCAAATTCTTCCAAGAGTGCTTCTGTGCCTATTCTACCCCGGAGGAAAATTACTCCGACGATGAAAAAGTCACTGTCCGTAAAGTTGAAGCCCACTTCAAATTGTTTATCTCCACAAAATAAGAGTCAATGGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTTCGGAATTTTGTGTAGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAACGGGGTGTCTCTCCATGAATTATCAATATCTCTCTCCAAGGACCGAAAATACTCTGCAAATGACAATGATGATTTATGCATTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTCGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGTTTTATGCAGGGGTGTTGACTTCAGCAGGTCTGGTTTTGGTCCACGCACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATATCTAAAGGAATTGCCGAAAGGTAACTGGCTTTGTTGCAATGATTGCAAGAGAATACATTCTACTTTGGAGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAATCTCTCTTGGCTGTTATAAAGAAAAAGCAAGGAGAAAAAGGATTGGATCCCATCAATGATATTAGTGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATCAATGCTTTGATCCTATAGTTGATGCAGCCAGCGGACGTGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGCATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATCTTCGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCATCATGGGAAGGGCTACTTCCAGACACTCTTCTCCTGCATTGAAAGGCTACTGGCTTTTATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACTGTCCATATGGACAGATAAATTTGGGTTTAGCAAGATAAAACCAGACGAGCTTACCAGCTACAGAAGGAACTGCAACCAATTTGTGAACTTCAAAGGGACAAATATGCTTCATAAAATGGTGCCTACATGTCGAATCATCAATAATCAACCCCCACCAATTTTTATTGAGAATAAGTCAATCATGAAAGCGGAAACCTCCTAG 3210 0.4321 MDASVEPESESTTVLLDQEMETVNGCIVYTRVKRSLNPCISISEDVDCKKFREDAEVPIELDNGVGECGDKTTFKRITRSAMKAKAENFKRITRSAMKVKIESGGKKVSVLEQRGAAVVSGKGVGVVPVRNLKRFSRSTKKEKAESCEDKVTVVEQQGAVVVSGKSNGVVPVKNSKRYTRSALKEKGDSCEENVTVVEQHGAAVVSAKGDGSVPVKNLKRFTRSTMKEKGESCEETGNVVEQQGAAVVSAKRIRRSAVKVTAESGEETVTELAQQGAAVANGESSVRMFKRITRSASMKGNPESGEETGTKLEQKRAAIVGNINGVLAAPRNKMELKMSKKIVVNKKPTTVKELFHTGLLDGVSVVYMGGLKKAPGLRGVIRNGGILCSCCLCKGSRVIPPSQFEIHACKQYKRSVEYICLENGKSLLDLLRACRRAPLHDLEATIQNFVCFPPEEKYFTCKRCKGSFPSSCMEGVGPICCSCVESCKPEESSKNVVGKRIRSPRPVLVSKSSCASELSISSKSKRHGKKRTESSKRDNSSNSSKSASVPILPRRKITPTMKKSLSVKLKPTSNCLSPQNKSQWKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGFGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCIVCWDGGNLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCVLCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPKGNWLCCNDCKRIHSTLENVLVRGAERLPQSLLAVIKKKQGEKGLDPINDISVSWRLLSGKNASPETRPLLLEAVSIFHQCFDPIVDAASGRDLIRAMVYGKSVRGQEFGGMHCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQTLFSCIERLLAFMKVKNLVLPAAEEALSIWTDKFGFSKIKPDELTSYRRNCNQFVNFKGTNMLHKMVPTCRIINNQPPPIFIENKSIMKAETS 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03103 1069 CDD PHD1_AIRE 687 727 - -
Vifa5g03103 1069 MobiDBLite consensus disorder prediction 518 553 - -
Vifa5g03103 1069 SUPERFAMILY FYVE/PHD zinc finger 766 829 IPR011011 -
Vifa5g03103 1069 ProSitePatterns Zinc finger PHD-type signature. 688 727 IPR019786 -
Vifa5g03103 1069 SMART PHD_3 775 832 IPR001965 -
Vifa5g03103 1069 SMART PHD_3 687 728 IPR001965 -
Vifa5g03103 1069 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 772 834 - -
Vifa5g03103 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 770 IPR013083 -
Vifa5g03103 1069 Gene3D - 874 1045 - -
Vifa5g03103 1069 ProSiteProfiles Zinc finger PHD-type profile. 685 730 IPR019787 -
Vifa5g03103 1069 Pfam Tify domain binding domain 625 669 IPR032308 -
Vifa5g03103 1069 Pfam Tify domain binding domain 379 434 IPR032308 -
Vifa5g03103 1069 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 931 1017 IPR016181 -
Vifa5g03103 1069 Pfam PHD-finger 688 729 IPR019787 -
Vifa5g03103 1069 SUPERFAMILY FYVE/PHD zinc finger 674 733 IPR011011 -
Vifa5g03103 1069 PANTHER AUTOIMMUNE REGULATOR 134 1042 - -
Vifa5g03103 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 834 IPR013083 -
Vifa5g03103 1069 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 674 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03103 Vifa-Chr5 1027660009 1027674007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03103 340 1050 PHD Transcription Factor Family AT2G36720 52.668 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa5g03103 TDBD 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03103 - - psat:127125742 1732.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03103 5 1027660009 1027674007 Vifa3g00943 3 229905893 229914887 PCT