Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03102 ATGAGATTCAACAGAACTTTCTTTTGGCTATCTAACTTTGTCATCTTTCTCTTTTCTATTATCATTATTCATTATACAACGCCACTTACCAACACCTCTAACACTACTATTAATAGTTCTCAAGGTAATCTCAGTTTTCAACTTAGCCTATTAAACAAGCTTATAAAGCTAAGTGGTGTTCAAGATTTCGTGTCTTTTGTGGTATCAACTATTGCACAACATCATCATAGCGAGAAACATAAGAAAAAACGTGACAAGGTCGAATGGACTTCTAAATTATTTTTAGATTACAATGCGACTATTGTTTTCACGGTTGATTTAAAGGGTCGTGCTAACTTTAGTAGCATTCAGAAAGCAGTTGACGCTGTTCCTGAATCTAGCTATAATACCACTCTTATCATAATCAATTCCGGTACATACAGAGAGAAAGTAGTGGTCCAAGCCAACAAAACAAATTTAATACTACAAGGTCAAGGGTATCTTAATACAATCATAGAATGGAATGACACTTCAAATTCTACTGGTGGGACAGCCTATAGTTACTCATTTGCAGTCTTTGCTTCTAAGTTTTCTGCTTACAACATTAGCTTTAAGAACACTTCTCCCCCACCTTCACCAGGAGAGGTTGGGGCCCAGGCGGTAGCGCTGAGAGTTACAGGTGATCAAGCCGCGTTCTATGGGTGTGGTTTTTACGGTGCGCAGGACACACTCAATGATGACATGGGAAGACATTATTTTAAGGAATGTTTCATTCAAGGATCCATTGATTTTATATTTGGAAATGCTAGATCACTTTATGAGGATTGCACCATAAACTCAATAGCAAAACAAGATTTAGGTGGTGTTGACGGGTCTATCACGGCGCAAGGACGAGAATCATTAGAGGAACAAACAGGATTTTCGTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCCTGGGGAGCATTTGCCACGGTTATTTTTTCAAGAACAAACATGTCTGATGTTGTTGCTCCTGAGGGATGGAACGATTGGAATGATCCATCTAGAGACCAGAGTGTTTTCTTTGGGGAGTACCATTGTATAGGAGTAGGGGCAAATTACACATCTAGAGTCTCATATGCAAGACAACTCAAAGATTCTGAAGCAGTCTCTTATATAAATGTTTCATACGTTGATGGGAATGATTGGCTTCTTAACTACTCCCTCCGGTCTTATTTATAA 1221 0.3874 MRFNRTFFWLSNFVIFLFSIIIIHYTTPLTNTSNTTINSSQGNLSFQLSLLNKLIKLSGVQDFVSFVVSTIAQHHHSEKHKKKRDKVEWTSKLFLDYNATIVFTVDLKGRANFSSIQKAVDAVPESSYNTTLIIINSGTYREKVVVQANKTNLILQGQGYLNTIIEWNDTSNSTGGTAYSYSFAVFASKFSAYNISFKNTSPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDMGRHYFKECFIQGSIDFIFGNARSLYEDCTINSIAKQDLGGVDGSITAQGRESLEEQTGFSFVNCNIVGSGKVWLGRAWGAFATVIFSRTNMSDVVAPEGWNDWNDPSRDQSVFFGEYHCIGVGANYTSRVSYARQLKDSEAVSYINVSYVDGNDWLLNYSLRSYL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03102 406 Pfam Pectinesterase 105 394 IPR000070 GO:0030599|GO:0042545
Vifa5g03102 406 Gene3D - 97 404 IPR012334 -
Vifa5g03102 406 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Vifa5g03102 406 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 96 397 - -
Vifa5g03102 406 SUPERFAMILY Pectin lyase-like 100 397 IPR011050 -
Vifa5g03102 406 FunFam Pectinesterase 97 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03102 Vifa-Chr5 1027657204 1027658909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03102 95 397 Carbohydrate Esterase AT1G05310 55.556 1.14e-122 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03102 - - gmx:100802034 628.632