Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03082 ATGCCGATCAGAAACATCGCCGTCGGAACTCCTCAAGAGGCCTATCACCCAGACACCTTGAAAGCCGGTTTGGCTGAGTTCATCTCCACCTTCATCTTCGTCTTCGCCGGTTCAGGGTCCGGTATCGCATACAACAAGCTTACCGACAACGGTGCCGCCACTCCCGCCGGTCTCATCTCTGCTTCCATAGCTCACGCATTCGCTCTCTTTGTTGCTGTCTCCGTCGGTGCTAACATCTCCGGTGGACACGTCAACCCCGCCGTCACCTTCGGTGCTTTCGTTGGTGGAAACATCACCTTACTCCGTGGTATCGTTTACATCATCGCTCAACTCCTCGGATCCATCGTCGCTTCCGCACTCCTCGTGTTCGTCACCGCATCGTCTGTTCCAGCATTCGGTCTATCCGCAGGAGTAGGAGTGGGTCCCGCTTTGGTGTTGGAGATTGTGATGACTTTCGGTTTGGTGTACACTGTGTATGCTACAGCCGTTGACCCAAAGAAGGGTAATATTGGAATTATTGCACCTATTGCTATTGGTTTCATCGTTGGTGCTAACATTTTGGTTGGAGGAGCCTTTACCGGAGCATCCATGAACCCCGCCGTGTCATTCGGGCCTGCCGTTGTGAGCTGGAGCTGGGCCAACCACTGGATCTACTGGGCCGGCCCACTTATCGGTGGTGGGATTGCTGGGCTTGTCTATGAGGTTCTTTTCATTAACGGCACCCATGAGCAGCTTCCAACCACTGACTACTAG 753 0.5378 MPIRNIAVGTPQEAYHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTDNGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFGLSAGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWANHWIYWAGPLIGGGIAGLVYEVLFINGTHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03082 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vifa5g03082 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Vifa5g03082 250 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Vifa5g03082 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Vifa5g03082 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g03082 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03082 Vifa-Chr5 1018814627 1018815510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03082 1 250 Major Intrinsic Protein MIP AT2G36830 79.681 8.53e-142 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03082 K09873 - gmx:100527509 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03082 5 1018814627 1018815510 Vifa5g03082 5 1018814627 1018815510 ECH