Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03079 ATGGAACCTCATAACCACCCTGTTGATGTTCATGTCTCTTCATCCGAAATCGATTCTCAACATTACGGGTGTTCGCATTATAAAAGGAGATGCAAGATCTTAGCGCCTTGTTGCAATGAAATTTTCGATTGCAGACATTGCCATAACGAATCTAAGAATTCGATTCATCTTCAACCTCAACATCGCCACGACATTCCTCGCCATCAAGTTAACAAGGTCATTTGTTCCTTGTGTAGCACAGAGCAAGATGTTCAACAAGTTTGCATTCAATGTGGTGTTTGCATGGGTAGATACTTCTGCTCCAAATGCAAGTTCTTTGATGACGATGTATCGAAAAAGCAATACCATTGTGATGAATGTGGCATTTGCAGAACTGGAGGCAGGGAGAACTTTTTCCACTGTGACAAATGTGAATGTTGCTATTCATCATCGATGAAGGATTCACACCATTGTATTGAAAAAGCAATGCATCACAATTGCCCGGTTTGTTTCGAGTTTCTTTTCGATACAACGAAAGACATCACTGTATTGCCATGCGGTCACACCATACATTTGGGATGTGTGAAAGAAATGCAACAGCATTTCCAGTATTCATGCCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGTGTGTGGGAGAAAATGGATGAGGAGGTTGCATCAACACCTATGCCTGAAATGTATCAAAACAAGATGGTTTGGATTCTATGCAACGACTGCGGGGAAACATCTGAAGTAAGATATCATATTGTGGCACAAAAGTGCCTTAGATGCAAGTCCTACAACACAAGAAAGACACAAGCTGCGTCGTGCTTGTCACGGATGGAGGAGATGGTTGAATGA 846 0.4149 MEPHNHPVDVHVSSSEIDSQHYGCSHYKRRCKILAPCCNEIFDCRHCHNESKNSIHLQPQHRHDIPRHQVNKVICSLCSTEQDVQQVCIQCGVCMGRYFCSKCKFFDDDVSKKQYHCDECGICRTGGRENFFHCDKCECCYSSSMKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVKEMQQHFQYSCPVCSKSFCDMSRVWEKMDEEVASTPMPEMYQNKMVWILCNDCGETSEVRYHIVAQKCLRCKSYNTRKTQAASCLSRMEEMVE 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03079 281 ProSiteProfiles Zinc finger CTCHY-type profile. 95 159 IPR017921 -
Vifa5g03079 281 Pfam Zinc-ribbon 207 265 IPR039512 -
Vifa5g03079 281 SMART ring_2 160 202 IPR001841 -
Vifa5g03079 281 SUPERFAMILY CHY zinc finger-like 19 95 IPR037274 GO:0008270
Vifa5g03079 281 Gene3D - 231 274 - -
Vifa5g03079 281 ProSiteProfiles Zinc finger RING-type profile. 160 203 IPR001841 -
Vifa5g03079 281 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 269 - -
Vifa5g03079 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 205 IPR013083 -
Vifa5g03079 281 SUPERFAMILY RING/U-box 158 208 - -
Vifa5g03079 281 ProSiteProfiles Zinc finger CHY-type profile. 17 93 IPR008913 GO:0008270
Vifa5g03079 281 SUPERFAMILY Zinc hairpin stack 96 153 IPR037275 -
Vifa5g03079 281 Pfam CHY zinc finger 24 105 IPR008913 GO:0008270
Vifa5g03079 281 Pfam zinc-RING finger domain 159 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03079 Vifa-Chr5 1016828981 1016831173 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03079 18 265 C2H2 Transcription Factor Family AT3G18290 38.976 9.81e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03079 K10144 - mnt:21405387 497.278