Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03073 ATGTTGTTCCAAACAAAAACAATATGCATTTTGGTAACTATCTTTGTTCTGAGTTCGTTCTCGCCACTTGGAATAGCAATGCTGAACTTAACTCTTCCTGGAACTCACCCTGATCCTGATGCTGTTGCTCATGAAGTTCACAGGAAGGTGAATGCATCAATGGCAAGAAGACAAACACTATCTGCCGGATCTGCATGCACCACAGGAAACCCAATCGACGACTGTTGGAAATGCGATCCAGAATGGCCAAACAATCGACAAAGGTTAGCAGACTGTGTTATTGGGTTCGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATACTACGTTGTAACGGATTCATCAGATGATGATCCCGTTACACCAAAACCTGGTACATTGAGATACGCTGTGATAAAAAACGAACCGTTATGGATCGTGTTTCCTAGTAACATGATGATTAAGCTGAAGCAAGAGTTGATTTTTAATAGCTATAAAACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGTTGCATTACTTTGCAGTTTATTAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCATCAGGAAACACAAACGTACGATCTAGTCCAGAACACTATGGTTACAGAACAATGTCAGACGGAGATGGAATCTCCATATTCGGTTCAAAAGACATTTGGATCGACCACTGTACCCTCTCACATTGCAAAGACGGACTAATAGACGCGATAATGGGATCAACCGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTTGGCCACAGTGATGACTACCTCCCCGACTCGGGAATGCAAGTCACAATCGCATTCAACCATTTCGGTGAAGAACTCGTTCAGAGGATGCCGCGTTGTAGAAGAGGATATATCCATGTCGTCAACAATGATTTCACTCAATGGGAAATGTATGCCATTGGTGGAAGTGGCGAACCGACTATTAATAGTCAGGGAAATCGTTATGTTGCTCCGGTTAATCTTTTTGCGAAAGAGGTTACTAAGAGAGTTGAAACAGAACAGAATAAGTGGAAAGGATGGAATTGGAGATCTGAAGGTGATGTTATGGTTAATGGTGCTTTCTTTGTTACATCCGGTGAAAGTCTTGAGGTTAAGTATGAGAAAGCTTTTAGTGTTGAACCTCAATCTGCTGATAGGATTGTTTTTCTTACCATGAATGCTGGTGTTCTTGGTAATGCAAGGGACAATAACGTGGGAATGTGGAGCAGAGGACCAAGCAGCACCGATGACGGTGTTTTGGATTCCGGCCCGGATTACACAGATGATATGTCGGGCAGTGCACTACCAATGTTGTCGTCTTCTTTTACTATGTTGTGCTTCTTGTTGTCTTACAGAGTGATTCTGTTAACAGTGCTTCTATAA 1422 0.4198 MLFQTKTICILVTIFVLSSFSPLGIAMLNLTLPGTHPDPDAVAHEVHRKVNASMARRQTLSAGSACTTGNPIDDCWKCDPEWPNNRQRLADCVIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAIMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGESLEVKYEKAFSVEPQSADRIVFLTMNAGVLGNARDNNVGMWSRGPSSTDDGVLDSGPDYTDDMSGSALPMLSSSFTMLCFLLSYRVILLTVLL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03073 473 PANTHER PECTATE LYASE 18-RELATED 34 412 IPR045032 GO:0030570
Vifa5g03073 473 SMART amb_all 144 341 IPR002022 -
Vifa5g03073 473 Gene3D - 69 411 IPR012334 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Vifa5g03073 473 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Vifa5g03073 473 FunFam Pectate lyase 69 411 - -
Vifa5g03073 473 Pfam Pectate lyase 150 329 IPR002022 -
Vifa5g03073 473 SUPERFAMILY Pectin lyase-like 70 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03073 Vifa-Chr5 1015345474 1015348365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03073 1 463 Polysaccharide Lyase AT3G53190 72.979 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03073 K01728 - gmx:100775595 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03073 5 1015345474 1015348365 Vifa5g03073 5 1015345474 1015348365 ECH
Vifa5g03073 5 1015345474 1015348365 Vifa3g00901 3 223590856 223593289 PCT