LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g03073	ATGTTGTTCCAAACAAAAACAATATGCATTTTGGTAACTATCTTTGTTCTGAGTTCGTTCTCGCCACTTGGAATAGCAATGCTGAACTTAACTCTTCCTGGAACTCACCCTGATCCTGATGCTGTTGCTCATGAAGTTCACAGGAAGGTGAATGCATCAATGGCAAGAAGACAAACACTATCTGCCGGATCTGCATGCACCACAGGAAACCCAATCGACGACTGTTGGAAATGCGATCCAGAATGGCCAAACAATCGACAAAGGTTAGCAGACTGTGTTATTGGGTTCGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATACTACGTTGTAACGGATTCATCAGATGATGATCCCGTTACACCAAAACCTGGTACATTGAGATACGCTGTGATAAAAAACGAACCGTTATGGATCGTGTTTCCTAGTAACATGATGATTAAGCTGAAGCAAGAGTTGATTTTTAATAGCTATAAAACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGTTGCATTACTTTGCAGTTTATTAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCATCAGGAAACACAAACGTACGATCTAGTCCAGAACACTATGGTTACAGAACAATGTCAGACGGAGATGGAATCTCCATATTCGGTTCAAAAGACATTTGGATCGACCACTGTACCCTCTCACATTGCAAAGACGGACTAATAGACGCGATAATGGGATCAACCGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTTGGCCACAGTGATGACTACCTCCCCGACTCGGGAATGCAAGTCACAATCGCATTCAACCATTTCGGTGAAGAACTCGTTCAGAGGATGCCGCGTTGTAGAAGAGGATATATCCATGTCGTCAACAATGATTTCACTCAATGGGAAATGTATGCCATTGGTGGAAGTGGCGAACCGACTATTAATAGTCAGGGAAATCGTTATGTTGCTCCGGTTAATCTTTTTGCGAAAGAGGTTACTAAGAGAGTTGAAACAGAACAGAATAAGTGGAAAGGATGGAATTGGAGATCTGAAGGTGATGTTATGGTTAATGGTGCTTTCTTTGTTACATCCGGTGAAAGTCTTGAGGTTAAGTATGAGAAAGCTTTTAGTGTTGAACCTCAATCTGCTGATAGGATTGTTTTTCTTACCATGAATGCTGGTGTTCTTGGTAATGCAAGGGACAATAACGTGGGAATGTGGAGCAGAGGACCAAGCAGCACCGATGACGGTGTTTTGGATTCCGGCCCGGATTACACAGATGATATGTCGGGCAGTGCACTACCAATGTTGTCGTCTTCTTTTACTATGTTGTGCTTCTTGTTGTCTTACAGAGTGATTCTGTTAACAGTGCTTCTATAA	1422	0.4198	MLFQTKTICILVTIFVLSSFSPLGIAMLNLTLPGTHPDPDAVAHEVHRKVNASMARRQTLSAGSACTTGNPIDDCWKCDPEWPNNRQRLADCVIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAIMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGESLEVKYEKAFSVEPQSADRIVFLTMNAGVLGNARDNNVGMWSRGPSSTDDGVLDSGPDYTDDMSGSALPMLSSSFTMLCFLLSYRVILLTVLL	473

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa5g03073	473	PANTHER	PECTATE LYASE 18-RELATED	34	412	IPR045032	GO:0030570
Vifa5g03073	473	SMART	amb_all	144	341	IPR002022	-
Vifa5g03073	473	Gene3D	-	69	411	IPR012334	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	216	237	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	152	168	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	116	141	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	318	337	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	389	412	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	92	109	IPR018082	-
Vifa5g03073	473	PRINTS	Pollen allergen Amb family signature	296	315	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g03073	Vifa-Chr5	1015345474	1015348365	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g03073	1	463	Polysaccharide Lyase	AT3G53190	72.979	0.0	673

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g03073	K01728		-	gmx:100775595	801.971

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g03073	5	1015345474	1015348365	Vifa5g03073	5	1015345474	1015348365	ECH
	Vifa5g03073	5	1015345474	1015348365	Vifa3g00901	3	223590856	223593289	PCT

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