Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03069 ATGGCAGCTAGAGAGCACACCACCAATGGTGTCCACACTAGTATTTGGAAAAGAAAAAGAATCTTCACACACCAACTTCTCACAGGTCGTTGGTTCATGTTATTCGCATCATCACTAATCATGTCTGTAGCAGGCGCAACCTACATGTTCGGTCTCTACTCAAACCAAATAAAAACCTCTTTATCCTACGACCAAACAACACTCAACCTTCTTAGTTTCTTCAAAGACCTCGGCGCCAACGTTGGTGTTATCTCCGGTCTAATCAACGAAATCACACCACCTTGGGTTGTTCTATCCACCGGTATCATCATGAACTTCTTTGGTTACTTCATGATATGGCTTTCCGTTACTAAAAAAATCCACACACCAAAAATCTGGCAAATGTGTGTCTACATTTGCATTGGTGCAAACTCTCAAACTTTTGCTAACACTGGTGCTTTAGTTACTTGTGTTAAGAATTTTCATAATACTCGTGGTAGTGTTTTGGGTCTTTTAAAAGGTTACGTTGGTTTAAGTGGTGCTATTATCACACAAATTTATCATACTTTATATTATAGCGACAATAATGATAATACTCAATCTCTTATTTTGCTTATCGCTTGGCTTCCTGCTGCTATTTCTTTTCTTTTTCTTCCAACTATTAGAATACTGAAATTGGAAAACATACAACAAAAAGAACATAAAGTTTTCTACAATCTTCTTTATATTTCACTTGGTCTTGCTGGTTTTCTCATGGTTTTGATCATTGTTCAAAACAAGCTAACTTTCTCAAGGATTGAGTATTTAGGTGATGGAGTTGTGGTTATTTTCTTACTCCTTCTTCCACTTGTTGTGGTATTCAGAGAAGAATTCAAAGCCAATAACATCATCTTGAAGGATGATAGTTCAATTTCTGGATTAAAAGTTGTCGTCACTCATGTCCAAGTTGAAGCATCAACAAATTCGGATAAGGAAATTTCTTGCTTGAGGACAATATTCAAACCTCCGAATAGAGGTGAAGATTACACAATTTTGCAAGCTTTGTTTAGCATTGACATGTTGATTCTTTTCCTAGCAACAACTTTTGGTGTTGGCGGAACATTAACGGCGATTGATAATTTGGGACAAATTGGTCATTCCTTGGGATATCCGAGTAAAAGTACTACAACTTTCGTGTCGTTGGTGAGTATATGGAACTATCTAGGACGAGTTGCGTCGGGTTATATGTCGGAGATCTTGTTAACAAAATACGAAATCCCTCGTCCATATCTACTCACTTTCGTTATGCTTCTCTCTTGCGCTGGTCATATTCTAATCGCTCTTGGTGTTTCTAACTCTCTTTATTTTGCTTCGGTGATTATTGGATTTTGTTTTGGAGCTCAATGGCCTTTGATGTTTGCGATTATTTCTGAAATTTTTGGATTGAAATATTACTCAACTTTGTATAATTTTGGAGCCGTGGCAAGTCCTGTGGGATCTTATATATTTAATGTGAGAGTGGCTGGTTATTTATATGATAAAGAAGCTTTGAAACAATTGGAGGCAAAGGGGTTTAGAAGACAAGAGGGAAAAGACTTAACATGTGTTGGTGTAGAGTGTTATAGAATGGCTTTTGTTATAATTACAGCATCAACTTTAATAGGATGTTTTGTTTCTTTAATTTTGGTGTTTAGAACTAGAAAGTTTTATAAGGATATATATGGAAAGTACAGGGCAGAACTTGAAGCAGCAGAGGCTGAGATGAGGATGTGA 1731 0.3674 MAAREHTTNGVHTSIWKRKRIFTHQLLTGRWFMLFASSLIMSVAGATYMFGLYSNQIKTSLSYDQTTLNLLSFFKDLGANVGVISGLINEITPPWVVLSTGIIMNFFGYFMIWLSVTKKIHTPKIWQMCVYICIGANSQTFANTGALVTCVKNFHNTRGSVLGLLKGYVGLSGAIITQIYHTLYYSDNNDNTQSLILLIAWLPAAISFLFLPTIRILKLENIQQKEHKVFYNLLYISLGLAGFLMVLIIVQNKLTFSRIEYLGDGVVVIFLLLLPLVVVFREEFKANNIILKDDSSISGLKVVVTHVQVEASTNSDKEISCLRTIFKPPNRGEDYTILQALFSIDMLILFLATTFGVGGTLTAIDNLGQIGHSLGYPSKSTTTFVSLVSIWNYLGRVASGYMSEILLTKYEIPRPYLLTFVMLLSCAGHILIALGVSNSLYFASVIIGFCFGAQWPLMFAIISEIFGLKYYSTLYNFGAVASPVGSYIFNVRVAGYLYDKEALKQLEAKGFRRQEGKDLTCVGVECYRMAFVIITASTLIGCFVSLILVFRTRKFYKDIYGKYRAELEAAEAEMRM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03069 576 Gene3D MFS general substrate transporter like domains 322 557 IPR036259 -
Vifa5g03069 576 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 31 557 - -
Vifa5g03069 576 FunFam Nodulin family protein 337 558 - -
Vifa5g03069 576 Pfam Major Facilitator Superfamily 369 552 IPR011701 GO:0022857|GO:0055085
Vifa5g03069 576 Pfam Nodulin-like 30 280 IPR010658 -
Vifa5g03069 576 SUPERFAMILY MFS general substrate transporter 29 554 IPR036259 -
Vifa5g03069 576 Coils Coil 553 573 - -
Vifa5g03069 576 CDD MFS_Mch1p_like 29 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03069 Vifa-Chr5 1013753986 1013755716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03069 20 566 Nodulin-like Gene Family AT2G39210 64.007 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03069 - - gmx:100818752 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03069 5 1013753986 1013755716 Vifa3g03631 3 1058652572 1058654335 ECH
Vifa5g03069 5 1013753986 1013755716 Vifa5g03069 5 1013753986 1013755716 ECH