Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03061 ATGGCAGCCGGAGCTGATCCTCGATTTGTCAATTTAGTATTTGACGGACACTCCGGCAACGAGGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAAGACGACGAAGATGATGAAGAGTATGTTCCCGATGTGCCGTCGTCTAGGGTTTCTTACCGTCTCCGGAATCTTACATCTGACGAAATGTTAGCCTTTCTCTTCGATGAAGGGCAGAATTCAGTTGAAGACAACAGAATAAAACGCCGCAGAACTGATGGAGGAGAGGCTTCCTCTTCTTCACTCCCAATCGGCAGTCAAGAGAATGACTGGAACCGCACCGAGGTTGACGGCCTCATTTGCCCTATCTGTATGGATGCTTGGACCGATGAAGGCGATCATCACGTCTGTTGTCTTCCTTGTGGGCACATTTATGGCATGTCTTGCATCAAAAAATGGCTTAAACAGCGGAGCAATTCGGGGAAGTGTCCTCAATGTAATATGAAATGTTCCATGAAGGATGTGAGGAAACTTTATGCTTCTCGAGTAGTTGTTGTTGATGAAGAATCTCATAAGAGAATTCGGTCACTTGAGACCCAATGTGCTTCTCTTGAGAGTAAGGACGGTGATTGGCGCAAGAAAGAAGCAGGATGGAAGAAGAGAGAAGCTGCATTGGATTTTGATGTTAAGAATCTCAGGGAGAGAAATACATATTTGGAGCAGCTGGTACTAGATATGCAGAGTAGACAATCCGGATTAATGGATGCCAGTGGGAACTCTCAATGGAGATATGAATCTGAGCTAAACTATAACCCAATGTCCCATGGAAAAGGATCCTTTTGCAATTTTGTATTTCAGAAAGCATTTCAACTGGATGGCGCTCGTTTATTTGATATGGACACTTACAATCAAATATTATTAATAGCTCATAAGCCAAAAGCAAGAGGTGAAGTGCACTTGATATCTAAAATAAGCTTAATATCTCCATTTGAGATGCAAGATATTGTACTGCCTTCATCTGCAAATGGTGTTAGAGACCTGCACATTTCTCCTTTCAATAGTAGACAGGCCCTTTATGCTTCATTAGGGAAGAAATTATCCGTGCTCAGCTTCGACAGTGGCACCCCTGTTCTCAATTATAATCTACAGGTTCCTGCTTGGTCCTGCTCATGGGATCGAAACAGCACACATTACATATATGCTGGACTACAGAATGGTTCTGTTCTGGTGTTTGACATGAGACAAACTGCAGGACCCTTAAAATATTTAGCTGGGTTAACTAGCAACCCTGTTCATAGTTTGCAGTCTCTTGCACAAACATCGAGTCTTCCTTCTGGTGCCAGAAGCATCCTATCCGCATCTGCCATCGGGCCTTGTCAATGGAACATAGATTCTGAAGAACGGTTTGTAGTTCCCGAGCCTTATAATCCCAATGATTATGATCAAGGAGTTTGTATATCCCTCGCCTATTGCCCGAGCAGTGATGACATTGTTGTTTCATACCGCCCAAAGTTCAATGCCATGGCGGAGGTGCCTCCTTCTCAATCATGGCCCCCTTCTACTTACGTTACTGGACAAGGAGTACAGGGTTCTCACGTATTGTTAAAGAGAACTGGCAGGGATAATTACCAAAAGACGGGTTCCTCGAATGCCAATGTCAGTGATATTCGACTACCAAAATGTGTACTTATAGACACTCAGAATCAAAATAGATTATTTGCATCAGTAGATGAAGCTACACACGAATTAGTCTTGCAAGAGTTGCCATCTTTTAGAACTATTCAACTATTCAAAATGCCTGCTCAGGTTCGCGATATTAGGTACTCTCCTAGTCATGGAATGCTTGGTTGTTTAACTGAGAACTCATTGCAACTATTCTGTACCAATCTCCAGTGA 1872 0.4311 MAAGADPRFVNLVFDGHSGNEEEEEEEEEEEEEDDEDDEEYVPDVPSSRVSYRLRNLTSDEMLAFLFDEGQNSVEDNRIKRRRTDGGEASSSSLPIGSQENDWNRTEVDGLICPICMDAWTDEGDHHVCCLPCGHIYGMSCIKKWLKQRSNSGKCPQCNMKCSMKDVRKLYASRVVVVDEESHKRIRSLETQCASLESKDGDWRKKEAGWKKREAALDFDVKNLRERNTYLEQLVLDMQSRQSGLMDASGNSQWRYESELNYNPMSHGKGSFCNFVFQKAFQLDGARLFDMDTYNQILLIAHKPKARGEVHLISKISLISPFEMQDIVLPSSANGVRDLHISPFNSRQALYASLGKKLSVLSFDSGTPVLNYNLQVPAWSCSWDRNSTHYIYAGLQNGSVLVFDMRQTAGPLKYLAGLTSNPVHSLQSLAQTSSLPSGARSILSASAIGPCQWNIDSEERFVVPEPYNPNDYDQGVCISLAYCPSSDDIVVSYRPKFNAMAEVPPSQSWPPSTYVTGQGVQGSHVLLKRTGRDNYQKTGSSNANVSDIRLPKCVLIDTQNQNRLFASVDEATHELVLQELPSFRTIQLFKMPAQVRDIRYSPSHGMLGCLTENSLQLFCTNLQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03061 623 MobiDBLite consensus disorder prediction 1 47 - -
Vifa5g03061 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 219 IPR013083 -
Vifa5g03061 623 Coils Coil 19 40 - -
Vifa5g03061 623 SUPERFAMILY WD40 repeat-like 329 618 IPR036322 GO:0005515
Vifa5g03061 623 CDD mRING-C3HGC3_RFWD3 109 171 - -
Vifa5g03061 623 ProSiteProfiles Zinc finger RING-type profile. 113 159 IPR001841 -
Vifa5g03061 623 Gene3D - 287 500 IPR015943 GO:0005515
Vifa5g03061 623 Pfam Ring finger domain 113 159 IPR001841 -
Vifa5g03061 623 PANTHER RFWD3 PROTEIN 19 621 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Vifa5g03061 623 SUPERFAMILY RING/U-box 103 165 - -
Vifa5g03061 623 MobiDBLite consensus disorder prediction 77 101 - -
Vifa5g03061 623 SMART ring_2 113 158 IPR001841 -
Vifa5g03061 623 MobiDBLite consensus disorder prediction 19 42 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03061 113 158 C3H Transcription Factor Family AT1G51930 42.553 2.21e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03061 K15691 - gmx:100818898 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03061 5 1012889616 1012895020 Vifa5g03061 5 1012889616 1012895020 ECH