Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03042 ATGCAGACTATAAAATTGGGTTTCTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGTATTAGAGAATGGTCTATGCGATATGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCAAAATTGGGTTTCTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGGATATATTGTCCTTGTTGAACACTGTTGAGGAATTGAAGCAATTGGTTTCAATTCTTCAAAAGTTTTATGGAGAGCAAAAAATTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAGAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAATATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTATGGCATTAGAGAATGGTCTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAAAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGTGTCGATGA 3261 0.4293 MQTIKLGFSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRVLENGLCDMDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPKLGFSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLDILSLLNTVEELKQLVSILQKFYGEQKIECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKYFNDFRTKLAGLTSVTRNYFENLVMALENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSKITDDNHWSCEQCTYANVRSATACQMCNQPCR 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03042 1086 Gene3D - 862 1017 - -
Vifa5g03042 1086 Gene3D - 335 464 - -
Vifa5g03042 1086 ProSiteProfiles Zinc finger RanBP2 type profile. 505 534 IPR001876 -
Vifa5g03042 1086 PANTHER CGI-12 PROTEIN-RELATED 556 868 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART zf_4 507 531 IPR001876 -
Vifa5g03042 1086 SMART zf_4 1060 1084 IPR001876 -
Vifa5g03042 1086 FunFam Mitochondrial transcription termination factor-like 657 873 - -
Vifa5g03042 1086 Gene3D Transcription termination factor 3, mitochondrial 579 692 IPR038538 -
Vifa5g03042 1086 Gene3D Transcription termination factor 3, mitochondrial 49 166 IPR038538 -
Vifa5g03042 1086 ProSiteProfiles Zinc finger RanBP2 type profile. 1058 1086 IPR001876 -
Vifa5g03042 1086 MobiDBLite consensus disorder prediction 468 482 - -
Vifa5g03042 1086 Gene3D - 503 536 - -
Vifa5g03042 1086 FunFam Mitochondrial transcription termination factor-like 130 346 - -
Vifa5g03042 1086 ProSitePatterns Zinc finger RanBP2-type signature. 1062 1081 IPR001876 -
Vifa5g03042 1086 MobiDBLite consensus disorder prediction 468 501 - -
Vifa5g03042 1086 ProSitePatterns Zinc finger RanBP2-type signature. 509 528 IPR001876 -
Vifa5g03042 1086 SMART mt_12 778 809 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 283 317 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 810 844 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 643 674 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 116 147 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 607 638 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 80 111 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 711 739 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 184 212 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SMART mt_12 251 282 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 MobiDBLite consensus disorder prediction 1025 1050 - -
Vifa5g03042 1086 Pfam mTERF 694 846 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 Pfam mTERF 66 212 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 Pfam mTERF 593 739 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 Pfam mTERF 167 319 IPR003690 GO:0003690|GO:0006355
Vifa5g03042 1086 SUPERFAMILY Ran binding protein zinc finger-like 505 532 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03042 Vifa-Chr5 1005896895 1005912102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03042 369 532 ARIADNE family AT1G65430 62.805 4.82e-56 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa5g03042 mTERF 3.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03042 K15032 - gmx:102667698 375.555