Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03042 | ATGCAGACTATAAAATTGGGTTTCTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGTATTAGAGAATGGTCTATGCGATATGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCAAAATTGGGTTTCTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGGATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCCTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGCTTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACGGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGGATATATTGTCCTTGTTGAACACTGTTGAGGAATTGAAGCAATTGGTTTCAATTCTTCAAAAGTTTTATGGAGAGCAAAAAATTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAGAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTGCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAATATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTATGGCATTAGAGAATGGTCTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAAAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGTGTCGATGA | 3261 | 0.4293 | MQTIKLGFSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRVLENGLCDMDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPKLGFSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMDFWVHHLGLDSLDLARAPGILQCSLEKRIIPRASVVQFLISKGLRRKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLDILSLLNTVEELKQLVSILQKFYGEQKIECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNGDGPSKYFNDFRTKLAGLTSVTRNYFENLVMALENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSKITDDNHWSCEQCTYANVRSATACQMCNQPCR | 1086 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03042 | 1086 | Gene3D | - | 862 | 1017 | - | - | |
| Vifa5g03042 | 1086 | Gene3D | - | 335 | 464 | - | - | |
| Vifa5g03042 | 1086 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 505 | 534 | IPR001876 | - | |
| Vifa5g03042 | 1086 | PANTHER | CGI-12 PROTEIN-RELATED | 556 | 868 | IPR003690 | GO:0003690|GO:0006355 | |
| Vifa5g03042 | 1086 | SMART | zf_4 | 507 | 531 | IPR001876 | - | |
| Vifa5g03042 | 1086 | SMART | zf_4 | 1060 | 1084 | IPR001876 | - | |
| Vifa5g03042 | 1086 | FunFam | Mitochondrial transcription termination factor-like | 657 | 873 | - | - | |
| Vifa5g03042 | 1086 | Gene3D | Transcription termination factor 3, mitochondrial | 579 | 692 | IPR038538 | - | |
| Vifa5g03042 | 1086 | Gene3D | Transcription termination factor 3, mitochondrial | 49 | 166 | IPR038538 | - | |
| Vifa5g03042 | 1086 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 1058 | 1086 | IPR001876 | - |
Showing 1 to 10 of 32 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03042 | K15032 | - | gmx:102667698 | 375.555 |
Showing 1 to 1 of 1 entries