Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03032 ATGTCAAAAGAATCTCAAGAGATTAAAACTGTTGAGCAATGGAAATGGTCTGAAATGCAAGGACTAGAGCTTGTCAATGATGATATCATGAACTCTTCTAAAGGGAACCTGCCAACAGTAACAGAAGAGGGTGTTACTGTTAATGGTTCTGAGAATCAAGTTCAAGTTTTGAAGGAAATGGAAGAAGATAACAAAGATGGTGATGGTGGTGGTGGTGGTAAGGAGAAGAAGGGTCAGAGTGTTGTTGATGCTGTTGGGTTTGGAGAGCTTTTTAGATTTGCTGATGGGTTGGATTATGTTTTAATGACAATTGGAACTGTTGGAGCAATTGTTCATGGTTGTTCTTTGCCTATTTTTCTTAGATTCTTTGCGGATCTTGTTAACTCTTTTGGGTCGAATGCTAATGATTTGGACAAGATGACACAAGAAGTTGTCAAGTATGCATTTTACTTCCTTGTGGTGGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGACTGGTGAGCGACAATCGACCAAGATGAGGATCAAGTATCTGGAAGCTGCTTTGAAACAAGACATTGAGTTCTTTGACACGGAGGTTCGAACTTCTGACGTTGTTTTCGCAATCAATACTGATGCCGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGAAATTTCATTCACTACATGGCTACTTTTGTTTCTGGTTTTGTTGTTGGATTCACTGCTGTTTGGCAATTGGCTTTGGTTACTCTTGCTGTTGTTCCTATGATAGCCGTAATCGGAGGCATTCACACCACAACTTTGGCTAAACTCACTAGTAAGAGCCAAGAAGCTCTTTCTCAAGCCGGCAACATTGTAGAACAGACAGTTGTGCAAATCCGAGTAGTGCTGGCATTTGTTGGCGAGTCTCGAGCACTACAAGGCTACTCGTCATCCTTGAAGGTTGCTCAGAAGCTTGGCTATAAAACTGGTCTTGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGCTGTTACGCGCTTCTTCTATGGTACGGAGGCTTTCTTATAAGGCATCACGAAACCAATGGAGGACTTGCCATCGCAACCATGTTTGCTGTCATGATTGGTGGAATAGGTCTGGGACAATCTGCGCCTAGTATGGCTGCATTTACAAAGGCGAGGGTCGCAGCTGCTAAGATTTTCCGGATAATCGATCACAAGCCTGGAATAGACAGAAACAGTGAATCAGGATTGGAATTGGAGACAGTTACTGGACTTGTGGAGCTGAAAAATGTCGACTTTTCTTATCCCTCTAGGCCTGATGTTAAAATCCTCAACGATTTCTCTTTGAATGTTCCTGCCGGAAAAACCATAGCTTTAGTCGGTAGCAGTGGCTCTGGCAAGAGTACTGTTGTTTCTCTTATTGAAAGATTCTACGACCCAACTTCAGGACAAGTTATGCTAGATGGACATGACATAAAAACTTTGAAGCTTAAATGGCTGAGGCAACAGATAGGACTAGTGAGTCAAGAGCCTGCTTTGTTCGCTACCACGATTCGAGAAAATATACTCTTGGGGAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCATTCATCATAAAACTTCCCGAAGGCTTTGAAACTCAGGTAGGAGAAAGAGGACTGCAACTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGCTAAAGAATCCAGCAATTCTTCTACTTGACGAAGCAACGAGTGCATTGGACTCTGAATCAGAAAAGCTGGTGCAAGAAGCACTTGACCGGTTCATGATTGGCAGAACAACTCTTGTAATTGCGCATCGTCTCTCCACCATTCGCAAAGCTGACCTTGTAGCTGTGATTCAACAAGGAAGTATTTTTGAAATTGGAACTCATGATGAGCTTTTCTCCAAAGGTGAAAATGGAGTTTATGCCAAGCTCATTAAGATGCAGGAGATGGCTCATGAAACTGCTATGAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCGAGTGCAAGAAACTCGGTTAGCTCGCCGATTATTACTAGAAATTCTTCTTATGGACGATCACCGTACTCACGTAGATTGTCTGATTTCTCTACATCAGATTTCAGTTTGTCCCTAGATGCATCTCATCCAAATTACAGGCATGAAAAGCTTGCCTTCAAAGATCAAGCCGGTTCCTTCTGGAGACTAGTTAAAATGAACTCTCCTGAATGGCTCTACGCTTTAATTGGCTCGATAGGTTCAATTGTTTGTGGATCACTTAGTGCTTTTTTCGCTTATGTTCTCAGTGCTGTTCTCAGTATCTATTACAATCCGGACCACAAATACATGATCCGAGAAATAAATAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTATCTTCAATACATTGCAACATTTCTTCTGGGATATTGTTGGCGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGGTGGCTGTGCTTAAGAATGAAATGGCCTGGTTTGATCAGGAGGAAAATGAGAGTGCGAGGATTGCTGCAAGGCTAGCTCTTGATGCCAACAATGTCAGATCAGCAATTGGAGACCGAATTTCGATAATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACTGCAGGTTTTGTGCTGCAGTGGCGTCTTGCCCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCGCATGCCAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGAACTGTTGCCGCCTTCAATTCAGAAGCAAAAATTGTTCGGCTTTTTGCTTCCAATCTTGAAACTCCGCTACAAAGGTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATACGGAGTAGCTCAGTTTGCACTTTATGCTTCTTATGCGCTTGGTCTTTGGTATGCTTCATGGCTAGTGAAACACGGAATATCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTCATGGTCTCTGCCAATGGGGCTGCCGAGACATTAACGCTGGCTCCTGAGTTCATCAAAGGAGGTAGAGCCATGAGATCAGTCTTTGATCTCCTTGATCGTAGAACCGAGATTGAACCAGATGATCAGGATGCTACTCCTGTCCCTGACCGTCTTCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCGTATCCCACTAGACCAGATATGCCAGTTTTTCGCGACCTTAATCTCCGTGTCCGAGCCGGCAAAACTCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCAGTGATTTCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTCATGATCGATGGAAAGGACATTAGAAAATACAACCTCAAGTCCTTAAGAAGACACATTTCTGTGGTACCTCAAGAGCCATGCCTATTCGCTACTACTATTTACGAAAACATTGCATACGGCCATGACTCTGCAACAGAAACCGAGATAATCGAAGCCGCGACACTTGCCAATGCTCACAAGTTCATATCTTCTCTACCAGACGGATACAAAACCTTTGTAGGGGAGAGAGGTGTTCAACTCTCCGGTGGACAAAAACAAAGAATAGCAGTTGCTCGCGCTTTTTTGAGGAAAGCCGAGCTTATGCTTCTTGACGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCTCTAGACCGTGCTTCGGCAGGAAAAACAACCATCATTGTTGCACATAAGTTATCGACTATCAGAAATGCCAACGTGATTGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGATCACATTCACAGTTATTGAAAAATCATCAAGACGGGATATACGCGCGCATGATTCAATTACAAAGGTTTACACCTAACCAGGTAATTGGTATGGCATCTGGTTCAAGTTCTTCAACATGA 4017 0.4354 MSKESQEIKTVEQWKWSEMQGLELVNDDIMNSSKGNLPTVTEEGVTVNGSENQVQVLKEMEEDNKDGDGGGGGKEKKGQSVVDAVGFGELFRFADGLDYVLMTIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANDLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALKQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLTSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQGYSSSLKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGFLIRHHETNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGLELETVTGLVELKNVDFSYPSRPDVKILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVMLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGFETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSIFEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRHEKLAFKDQAGSFWRLVKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSIYYNPDHKYMIREINKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLVAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISIIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEAKIVRLFASNLETPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPEFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRVRAGKTLALVGPSGCGKSSVISLIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATETEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASAGKTTIIVAHKLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHQDGIYARMIQLQRFTPNQVIGMASGSSSST 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03032 1338 FunFam ABC transporter B family member 1 1071 1321 - -
Vifa5g03032 1338 SUPERFAMILY ABC transporter transmembrane region 90 410 IPR036640 GO:0005524|GO:0016020
Vifa5g03032 1338 Gene3D - 424 689 IPR027417 -
Vifa5g03032 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1081 1317 IPR003439 GO:0005524
Vifa5g03032 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 758 1045 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g03032 1338 ProSitePatterns ABC transporters family signature. 1220 1234 IPR017871 GO:0005524|GO:0016887
Vifa5g03032 1338 FunFam ABC transporter B family member 1 89 424 - -
Vifa5g03032 1338 Pfam ABC transporter 444 593 IPR003439 GO:0005524
Vifa5g03032 1338 Pfam ABC transporter 1100 1248 IPR003439 GO:0005524
Vifa5g03032 1338 FunFam ABC transporter B family member 1 737 1046 - -
Vifa5g03032 1338 Pfam ABC transporter transmembrane region 102 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g03032 1338 Pfam ABC transporter transmembrane region 759 1028 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g03032 1338 SMART AAA_5 453 639 IPR003593 GO:0016887
Vifa5g03032 1338 SMART AAA_5 1108 1300 IPR003593 GO:0016887
Vifa5g03032 1338 CDD ABC_6TM_Pgp_ABCB1_D1_like 102 399 - -
Vifa5g03032 1338 SUPERFAMILY ABC transporter transmembrane region 745 1065 IPR036640 GO:0005524|GO:0016020
Vifa5g03032 1338 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Vifa5g03032 1338 MobiDBLite consensus disorder prediction 672 703 - -
Vifa5g03032 1338 CDD ABC_6TM_Pgp_ABCB1_D2_like 748 1063 - -
Vifa5g03032 1338 Gene3D ABC transporter type 1, transmembrane domain 149 1054 IPR036640 GO:0005524|GO:0016020
Vifa5g03032 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 104 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g03032 1338 Gene3D - 1072 1326 IPR027417 -
Vifa5g03032 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 662 IPR003439 GO:0005524
Vifa5g03032 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1072 1320 IPR027417 -
Vifa5g03032 1338 CDD ABC_MTABC3_MDL1_MDL2 1081 1320 - -
Vifa5g03032 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 665 IPR027417 -
Vifa5g03032 1338 PANTHER ABC TRANSPORTER B FAMILY 71 805 IPR039421 -
Vifa5g03032 1338 FunFam ABC transporter B family member 19 1047 1069 - -
Vifa5g03032 1338 FunFam ABC transporter B family member 1 416 666 - -
Vifa5g03032 1338 CDD ABC_MTABC3_MDL1_MDL2 426 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03032 Vifa-Chr5 1000828377 1000833914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03032 104 682 Calmodulin-binding Proteins AT2G36910 39.071 3.52e-120 404