Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03016 ATGAAGTGTTTTTCATTCCAATCTGGTAATAAGAAAGATGAACCGAAAGGCTTGCAATCCGCGTCGGGCCGGTCGGACAGTTCTGCGTATGTTGATGTTGAAGGAAGAAGATGTGGTTCTGAGTTGAATTCTCAGGATGTTTCGGATAGTGGCAGCGTGGAATCCCTCAGGAGGAACGCGCCTCCTAATTTGTCCCAAAGGCCGAGTAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCGGCCACAAAGAGTTTCAGTCGATCGGTTATGCTTGGAGAGGGCGGGTTCGGTTGTGTCTATCAGGGCGTAATTAGAAGTGTAGATGACCCTTCCAGAAGAATTGAGGTTGCTGTTAAACAACTTAGTAAAAGAGGAGTGCAGGGGCATAGGGAATGGGTGACGGAGGTGAATGTTTTAGGCATTGTTGAGCATCCAAATCTTGTGAAACTTGTGGGATACTGTGCCGATGATGACGAAAGAGGAATCCAACGGCTTCTGATATATGAATACATGCCGAACAAAAGCGTGGAACACCATTTATCTCATCGCGCGGAGACTCCTCTCCCATGGAGCAGGAGATTAAAAATAGCACAAGACGCTGCTCGTGGATTAACATACCTGCATGAAGAAATGGATTTTCAGATAATTTTTAGAGATTTCAAATCTTCGAATATCCTTTTGGATGATCAGTGGAATGCCAAGCTATCCGACTTTGGGTTAGCGAGACTGGGACCATCGGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGGTACGCAGCTCCTGAATATCTCCAAACCGGACGTCTCACATCGAAGAATGACGTATGGAGCTACGGTGTTTTCCTTTACGAGATCATTACTGGCAGACGCCCTTTAGATAGAAATCGCCCCAAGGGTGAACAAAAGCTGTTGGAATGGATAAAGCCATACCTATCAGATACAAAGAAATTTCAACTGATATTGGATCCAAGACTTGATAAGAAACAAGTACTCAAATCAGCCCAAAGACTTGCTACGATAGCTAACCGGTGCTTAGTTAAGAACCCAAAGAATCGCCCGAAGATGAGCGAGGTTTTGGGAATGGTGAATGGAATAGTAGACTCATCTTCCGACGCTAATTCACAACTACCCTTGAAGAATGTTTCGAGAGTAGAAGTTTCTCCAGACAATGAAATAAACAGCGCGAAGAAACGGAGCATGGATCAGAAGTCTAGAGAAAGTAATTGGTTTTTTAAGATGTGGAGACCAAAGCTTTTAAGAACATGA 1281 0.4411 MKCFSFQSGNKKDEPKGLQSASGRSDSSAYVDVEGRRCGSELNSQDVSDSGSVESLRRNAPPNLSQRPSNLRVFTVSELKSATKSFSRSVMLGEGGFGCVYQGVIRSVDDPSRRIEVAVKQLSKRGVQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNKSVEHHLSHRAETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYLQTGRLTSKNDVWSYGVFLYEIITGRRPLDRNRPKGEQKLLEWIKPYLSDTKKFQLILDPRLDKKQVLKSAQRLATIANRCLVKNPKNRPKMSEVLGMVNGIVDSSSDANSQLPLKNVSRVEVSPDNEINSAKKRSMDQKSRESNWFFKMWRPKLLRT 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03016 426 CDD STKc_IRAK 92 370 - -
Vifa5g03016 426 FunFam Serine/threonine-protein kinase BIK1 54 171 - -
Vifa5g03016 426 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Vifa5g03016 426 Gene3D Phosphorylase Kinase; domain 1 58 171 - -
Vifa5g03016 426 Gene3D Transferase(Phosphotransferase) domain 1 172 391 - -
Vifa5g03016 426 MobiDBLite consensus disorder prediction 41 67 - -
Vifa5g03016 426 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Vifa5g03016 426 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Vifa5g03016 426 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g03016 426 PANTHER OS01G0588500 PROTEIN-RELATED 49 368 - -
Vifa5g03016 426 MobiDBLite consensus disorder prediction 1 67 - -
Vifa5g03016 426 FunFam Serine/threonine-protein kinase PCRK2 172 381 - -
Vifa5g03016 426 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03016 Vifa-Chr5 992951496 992953139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03016 72 382 Glycoside Hydrolase AT3G07070 44.728 1.31e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa5g03016 PK_Tyr_Ser-Thr 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03016 - - gsj:114400704 729.169