Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03015 ATGGAAATGAATCACATTTTATTCTTGTCTACTTTTACCATCACAAACTTGCTACTACTACCACATGTTCTATGTCTAGATCAAGGTAATTCTCTTGCACCTTCGTTTATCACAAAGGAAATCTACAAACAGCTTGAAGGTCTCACTACCACTTTAACAGAAGATATCAAACAAGATTTAGGTTTCTGCATACAAGATGTGAATAAAGATTGGGAGGAAGCCTTTAATTTTAAGGGGGAATTGGATTTTGTAGAGGCTTGTGTTAAGCAAAAAGGTGATTTTACTGATAGAGTTTGTACCACTGCTGAAATAAGGAACTACTTTCAGAGTTTTTTCCTAGAAGGAGGCACATCTGCGAGTTACGTGAAACCGAACAAAAATTGCAACTTGACTTCATGGGTTTCTGGTTGTGAGCCGGGTTGGAGTTGTAGTGCTGATCAAAGAATTGATCTCAAAAACGATACAAAGGATGTTCCTTCTAGAACCAATGACTGTCAACCATGTTGTGAAGGGTTTTTCTGTCCTCAGGGATTAACTTGCATGATAACATGTCCACTTGGTTCTTATTGTCCACTTGCTAAATTGAACGAAACAACTGGAGTATGCGATCCATATAGTTATCAAATTCCTGCTGGAGACACAAACCATACTTGTGGTAGTGCTGATATCTGGTCTGGTGTTGTGAACAATAGTAATATCTTTTGTTCTCCGGGATCATATTGTCCATCTCCCACGCGCAAAGTTTCTTGCGATGAAGGATATTACTGCAGGATGGGTTCAACTCATCAAAATCGATGCTCCAAGTTGAGTAGCTGCAATCCAAATACATCAACCCAAAACATGCATGCTTACGGCGCTTTGATTATTGTTGGTATGAGTACAACTCTGATCTTCATTTATAACTGTTCTGATCAAGTTCTAGCTACTAGAGAAAGAAGGAAGGCTAAATCAAGAGAAGCTGCAGCAAAACACGTAAGAGAAACGGTACAAGCTCGTGAAAGATGGAAACAAGCAAGAGAGTTTGCTAAGAAAGGTTCAGCTGGATTGCAGAAGCAGATGTCTCGAACCTTTTCACGCAAGAAATCCAGTAAGCAAGGAGATCAAATTCCACCAACGCCTCCAGATTCGTCAAGCAAACCAGGGCAAGCAGCGAAAGCCAAAAACAAGGAGCCTAGCGATCTTACTAAAATGATGCATTCCATTGAGGATGATGGACCTGAAGGATTTGATTTTAAGATTGGTGATAAGAACATTAAAAAGCAAATGCCGAAGGGAAAAAATTTACACACTCATAGCCAAATTTTAAGGTATGCTTATGGCCAGATTGAGAAGGAGAAAGCTCAGCAAGAACAAAACAAGAACATGACATTCTCGGGACTAATTTCAATGGCCTCTGAAGGTGAGGAAGTAAAATCAAGACCTTCGATTGAGGTAGCTTTCAATAATCTAACCCTTACTTTGAAAGGTAAAAACAAGCACATACTCAGGTGTGTGAGTGGTGAATTCATGCCTGGTCGAGTTTCGGCTGTTATGGGACCCTCGGGAGCTGGAAAAACAACATTTCTTTCAGCTTTGGCCGGAAAAGCAAGAGGGTGCAATCAGTCGGGATCAATTCTAGTTAATGGAAAAAATGAATCCATTCACTCTTATAGGAAAATTACTGGTTTTGTACCACAAGATGATATCGTGCATGGAAACTTGACAGTAGAGGAAAATCTTCGTTTCAGCGCAAGATGCAGGCTCCCTGCAGACATGCCCAAACCAGATAAGGTTCTGATAGTTGAAAGAGTGATTGAGGCCTTAGGGCTACAGCCAGTAAGGGATTCTCTAGTTGGGACGATAGAGAAGAGAGGCATATCCGGAGGACAAAGAAAACGTGTAAATGTCGGACTAGAGATGGTGATGGAGCCTTCATTATTAATCTTAGATGAACCTACAACTGGTTTGGACAGCGCATCGTCAAGTTTACTTCTTAAAGCGCTTCGCCGTGAAGCTCTTGAAGGTGTAAACATCTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAGTATTTCTAGCCAAAGGTGGTCTTACAGCATATCATGGTCCTGTGAAAAAAGTGGAAGAATACTTTGCTGGCATTGGAATCCCGGTACCGGATCGTGTCAATCCTCCAGACCATTTCATTGATATTCTTGAAGGTTTAGAGAAACCAACTTCTGGTGTAACTATTGAAACACTTCCTGTGAGATGGATGCTTCATAATGGATATCCAGTACCACCTGATATGCTTCATTTGACCGATCAAATTGCCGCTCCTTCATCTGCTGCCTCGGATGCAACTAGCACATCAAAGGGTGTTGAGGAAACTTCTGATGAATCCTTTTTTGTAGAGTTTTGGGAGGATTTGAAGAGCAATATTAGGACGCAACGAGATCAAATAGAAGCGATCTTCTCAAGAACAAAGGATTTGTCTGGCCGAGTAACTCCTAGTGTAGCCCACCAATATAGATACTTCGTTGGCCGGGTTGGCAAGCAGCAGTTGAGAGAAGCAAAACTACAAGCAGTCGACTATCTCCTTTTATTGGTCGCCGGCGCTATCTTAGGAACTCTTACCAAAGTAAACGATGAAACTTTCGGATCCCTTGGTTATACATATACAGTCATTTCTGTTTCTCTACTTTGCAAGATTGCAGCACTCAGATCATTTACTATGGATAAGTTACAATACTGGAGAGAAAGTGCAGCTGGGATCAGTAGTCTAGCCCATTTTCTCGCAAAAGATACGATCGATCTTTTTAGTACAATCACCAAACCTGTAGTTTATCTCTCCATGTTCTTTTTTTTAAGTAATCCAAGATCAACTTTTGGAAGTAATTATATAGTTTTGGCTTGTTTGGTGTATTGTGTCACTGGCATGGCTTATGCATTAGCCATCTTCTTTCAACCTGCTCCTGCTCAGCTGTGGTCAGTGCTTGTTCCTGTTGTTATGACTCTCATTGCCAACCAGACTAGAGATACTACATTTATGAAGATCCTAGTACAGTTTTGCTATCCGAAATGGGCTTTGGAGGCTTTTATCATTGCAAATGCTGAAAGGTACACTGGGGTATGGCTGATAACTCGTTGTAGTTCACTGATGAGCGGTAGTTATAATGTCAACTCGTGGAATGTTTGTCTAATTGTCCTCGTTTTGTATGGAATGATTGCCCGAGTTGTAGCCTTCATTTGTCTGGTAATTTCCCAAAAGAGGTGA 3255 0.4089 MEMNHILFLSTFTITNLLLLPHVLCLDQGNSLAPSFITKEIYKQLEGLTTTLTEDIKQDLGFCIQDVNKDWEEAFNFKGELDFVEACVKQKGDFTDRVCTTAEIRNYFQSFFLEGGTSASYVKPNKNCNLTSWVSGCEPGWSCSADQRIDLKNDTKDVPSRTNDCQPCCEGFFCPQGLTCMITCPLGSYCPLAKLNETTGVCDPYSYQIPAGDTNHTCGSADIWSGVVNNSNIFCSPGSYCPSPTRKVSCDEGYYCRMGSTHQNRCSKLSSCNPNTSTQNMHAYGALIIVGMSTTLIFIYNCSDQVLATRERRKAKSREAAAKHVRETVQARERWKQAREFAKKGSAGLQKQMSRTFSRKKSSKQGDQIPPTPPDSSSKPGQAAKAKNKEPSDLTKMMHSIEDDGPEGFDFKIGDKNIKKQMPKGKNLHTHSQILRYAYGQIEKEKAQQEQNKNMTFSGLISMASEGEEVKSRPSIEVAFNNLTLTLKGKNKHILRCVSGEFMPGRVSAVMGPSGAGKTTFLSALAGKARGCNQSGSILVNGKNESIHSYRKITGFVPQDDIVHGNLTVEENLRFSARCRLPADMPKPDKVLIVERVIEALGLQPVRDSLVGTIEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGIPVPDRVNPPDHFIDILEGLEKPTSGVTIETLPVRWMLHNGYPVPPDMLHLTDQIAAPSSAASDATSTSKGVEETSDESFFVEFWEDLKSNIRTQRDQIEAIFSRTKDLSGRVTPSVAHQYRYFVGRVGKQQLREAKLQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVISVSLLCKIAALRSFTMDKLQYWRESAAGISSLAHFLAKDTIDLFSTITKPVVYLSMFFFLSNPRSTFGSNYIVLACLVYCVTGMAYALAIFFQPAPAQLWSVLVPVVMTLIANQTRDTTFMKILVQFCYPKWALEAFIIANAERYTGVWLITRCSSLMSGSYNVNSWNVCLIVLVLYGMIARVVAFICLVISQKR 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03015 1084 SMART AAA_5 504 696 IPR003593 GO:0016887
Vifa5g03015 1084 CDD ABCG_EPDR 475 702 - -
Vifa5g03015 1084 MobiDBLite consensus disorder prediction 389 409 - -
Vifa5g03015 1084 Pfam ABC-2 type transporter 676 1083 IPR043926 GO:0140359
Vifa5g03015 1084 Gene3D - 465 713 IPR027417 -
Vifa5g03015 1084 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 445 1072 - -
Vifa5g03015 1084 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 478 719 IPR003439 GO:0005524
Vifa5g03015 1084 ProSitePatterns ABC transporters family signature. 619 633 IPR017871 GO:0005524|GO:0016887
Vifa5g03015 1084 MobiDBLite consensus disorder prediction 363 383 - -
Vifa5g03015 1084 FunFam ABC transporter G family member 24 472 714 - -
Vifa5g03015 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 476 701 IPR027417 -
Vifa5g03015 1084 Pfam ABC transporter 497 646 IPR003439 GO:0005524
Vifa5g03015 1084 MobiDBLite consensus disorder prediction 340 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03015 Vifa-Chr5 992919160 992924338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03015 456 698 Calmodulin-binding Proteins AT2G36910 27.092 2.77e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03015 - - lang:109333797 1712.2