Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03007 ATGGTTTCCGGATCAGGAGCCTGCGCAAAGAGAATGGTGGTTGACGCTCGTCACCACATGCTCGACCGCCTTGCCTCAATAGTCGCGAAGGAGCTTCTCAACGGTCAGAAGGTTGTTCTCGTTAGATGCGAAGAAATTTGCATCTCTGACAGTATCGTTAGACAGAAGATGAAATACATGAGGTTCCTTCGTAAGCGTATGAACACCAAACTCTCTCATGGTCCTATTCACTTTCGTGCTCCGTCCAATATCTTTTGGCGCACTGTTCATGGAATGATTCCACACAAGACCAAACATGGAGAGGCTGAACTTTCTAGGTTGAAAGTATACGAGGGAATTCCTCCAACATATGACAAGATCAAAAGGATGGTGGTACCTAATGCCCTTAAGGTGTTGAGGCTTCAAAAGGGACACAAATATTGCTTGCTTAGGCAGTTGTCATCCAAGGTTGGATGGAATTATTATGACACCATCAAGGAGCAGAAGGAAGAAAAAGAAAGCAGATCGAAGGGAAGAAAGATAATTTGTGATTAG 534 0.4438 MVSGSGACAKRMVVDARHHMLDRLASIVAKELLNGQKVVLVRCEEICISDSIVRQKMKYMRFLRKRMNTKLSHGPIHFRAPSNIFWRTVHGMIPHKTKHGEAELSRLKVYEGIPPTYDKIKRMVVPNALKVLRLQKGHKYCLLRQLSSKVGWNYYDTIKEQKEEKESRSKGRKIICD 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03007 177 PANTHER RIBOSOMAL PROTEIN L13 3 169 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vifa5g03007 177 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 164 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 Pfam Ribosomal protein L13 11 114 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vifa5g03007 177 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa5g03007 177 CDD Ribosomal_L13 13 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03007 Vifa-Chr5 990030069 990030602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g03007 1 169 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 79.290 5.37e-100 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03007 K02872 - gmx:100527190 285.034