Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa5g03003 | ATGATTGTTGTATGTGACATGAAAGCCCAGACTCTTGTTACTGATGTTGGAGGGGATTCCTATTCAAAGTACGGCAAAGAATTGACTGAAGAGTATAAAGATAACACACTTGTGGATCCTCATGGTAAAAATGGAAAAGGTGTTGGGGAAGTTGTTTGTTACAAGTGCTTGCACCGAGGAGGAACACTCTTGTACTGTTGTGGTAAAAAATGTGGAACGAGGTATCACCCGTCTTGTTTGGATCTTCCTCTCAAATTTCTTCCTATAGGGTATTGGCATTGTATTTGTTGTAATGAGAAAAAAATAAAGCTTGGCGTGCATTCTGTTTCTAAAGGGGTAGAATCCATATTTGATTCCCAAGAAGTGGTCTCAAAAGATGAAGTTATCGAAAGGGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGTTGGATTCCAGAAAAACAGATGCTTGTTGAGGCTCCGAAGCTTTTGGAAAAGTACAAGAAGAAACAACAGGTTGTGAGGTGGAAAAAAGATTGGAGTAGACCTCAACGGTTGGTGCTAAAAAGGAAAATTATATTGTCAAAGCAAAATGCCGACACTTTTGATGGAAATGATGACAATGATTCAATTTGTCAATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATATTACATGGGAGTTAGACGATGCTTCATTTATGAGATCTTCTAAAGGCATGAAACTTGTAGAGAATTATGAAAGTCGTCAAAAGAGATCGGTTGGACTGTCAAATCCTTTTGAAGCTAACGAGGAGAGAAAAGTTTCCTTTTTTGAATTATCAGAGTTATCATCATTTGGAGATTCACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATCATTGACGATCAAATTGACCAGGAGCGGATTACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATACTCTCAACTTCAACTGGCCTCTCTACATGGGAAACAGAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAAGGAACAAAATATGTACGCGATAGCATCAGAGCATTAGAGTTTTACAATGAAGATGGTGGTAGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCACTGAGATACATTCAATGGGAAGCAATTATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCGATATTCTAAAAGCTGAGACACGACTCCTCCTCATCAGTGGACAAATCAAGGAAGATCGTGCGGATTATATGAAACTCCTTTCATTCCTTAAGTCAGGACATGATGAGATACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATACATTGCACTCAAGTGCAGTTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGCTGTTATGCTCAGGCCAAAAGTCTAATTCTGTTGATGCCCTCCACGACCTTATCATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACCCGTCACTGGGTAGTTTGGCAACTGAAGGTCTGCCTGTTGAAGAGCATTTAGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAATATTCTCGTTGAAGCTAAAAGTCGTGATCTAAGAGTGATGATATTATATCAGTCTAGTGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAACGACTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAAAAAGTGGACAATTTGTTTTCTTGATAGAGAGCAGTGCTTGTGTCCCTAGCATTAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCGCAAAGTGACCTAAAATGCCTACAAAAAATGTCCGTCAGCTCAAAGTTCAATAAGTTAACAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGACGGTTTGGCTCTTGATAGCAACGTGCAGTTGCTTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGATTTGCATGGAAGCGGCACCTCGGTCTCTGCTTTAGACATCTCTGATCATTCAACTCTGAATGGTGTAATCTTTGAATTATCATCCAAATTGGGTTGTGACAGCAAGGGGACTGATTGTCACGGACAGTCATTCGTATCGAGAGTACAACAGAATGGAGGGGAATATGAAAGAAACATTTCATTGCTAGGAGAAAGAGAGATGAAGAAATTGGGCAATGAAACACATACTCTTTCATGGAGTGATCTCCTAAAAGGAAGGAATCCTCACTGGAGGTTTTTGCCTGTTTTGCCTCAAAGTATCAGAAAAAGACTTGAGTATTTTCATCACTCACTAGCAGAATCTGAGAAGGATACTGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAGTGTCCAAGGATATTGTTGGTACTAAGAGGAGGGGATTCTCAAAGAGTGTTGCTGATCCTAAGACTGGGAAAGTTGCCAAGGAAATTGTTGATTCCAATCGCAGTAAAGTTTCCGTGGATATTGTTGGTTCCAAACATGTGAAAAAAAAGTGGAAGAACAAGAATCGGAGTCCTGGTGAAAGGAAAAGGAAATTAAACGCACATCCTTTGCCCGATGAAATGACAGGAGTATCTGTAATGAACAAACCAATTAAAAAACAAAAGGAGCGGCCTGACATGCCCAAGAGCACCAAACTCTTGTCAAAGCCTGCTATTTCAGATCTCTGTGATGTTCTACACATTCCGGAAAATGTCAAGGCTGTCGCCATGAGGCTTCTTGAGTATGTATTTGAACATTACAACGTTCGTTGCCTGGAAGTTTCTATAGTGCAGGCATATGAAATATCGGTGTGTTGGCTTGCAGCTTCTTTATTGAAACACGAGATTGATAGGAAACATTCACTTGATCTTGCAAAACAGCACTTGAATTTCAGTTGCAAGGAGGAAGAGGCAACTTATGTTTACGATAAACTGCAGAAGCATGAGAAAGATTTTTCAAACTGTTTACAAAATGAACTTTGTGTTGAGAAAGATAATACACATATTGGTCCAGGCTCCTTGACACCTGAGCTGAAAGATTTGGTAGAGGATGAGAAACAAAAGGGTTTTCAGCATCCTCATGTTTTAAATCTTGTGAAATCTGCCACACATGAAGCTGATCTTCCAAGAAACTCTCCCACAAATGAAGCTGATCTTCCAAGAAACTTTCCCACGAATGAAGCTGATCTTCCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTCCACAATGTGATGACAGTTTTTTTGAAGATCTTCCAATTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCATCCTGCACAACTTCTCAATGTTGAGATAGATACTGTAACTTGTGATAGAACTGCTGTTCCTGAGGTAATACAGCCGTACAGTGTAGTGACTCCTATATGTGGTGAGTCAACTAGTTCAGAGTTTTCTGAGTGGCCTTTACCATATACGCAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGAGAATGAAAATTTCACTTGTGCTCCTCATGACATTACCAATCCTGGATATATAAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATGCCACATGATGATGCAGACTCATTATTAATAGAAATGGAGCAAATAATAAAGAAGAAGGAAGAAGCCTACAAGGCATGTGAAGAAAAAATATTGCAGCTGCAGTCTGACTACACAAAGGAGTACGAAATGTTAAGGGAAAAGTACAATATGTTGCTTCAGAATGTTGATACTTCAGTAGCATTAAAGCATGAGGACCTTGAGACACAGCGTAATATCGTTTCCAAGAGTATGGTATTAGCTGATCTTTGGAGCCGAAATTATAGTAGTTGTTTTTATAGTAATCTGCAGCAGAATGTACATAACATAGAAACATCCATCTATGATTCACCATACCACCCGTATGCCTGCTCAATGACACCATCAGTTTATGGAAACATCCATCTATGA | 4902 | 0.3913 | MIVVCDMKAQTLVTDVGGDSYSKYGKELTEEYKDNTLVDPHGKNGKGVGEVVCYKCLHRGGTLLYCCGKKCGTRYHPSCLDLPLKFLPIGYWHCICCNEKKIKLGVHSVSKGVESIFDSQEVVSKDEVIEREYFVKYQGLAHAHNCWIPEKQMLVEAPKLLEKYKKKQQVVRWKKDWSRPQRLVLKRKIILSKQNADTFDGNDDNDSICQYEWLVKWTGLGYDHITWELDDASFMRSSKGMKLVENYESRQKRSVGLSNPFEANEERKVSFFELSELSSFGDSPGLYNQHLSYVNKLRMCWHKGQSAVIIDDQIDQERITKVILYISSLSCNVKRPFLILSTSTGLSTWETEFLNLAPSANLVVYKGTKYVRDSIRALEFYNEDGGSSFQILLSSSDIIIEDLHALRYIQWEAIIIDECHRPRILGQFDNLDILKAETRLLLISGQIKEDRADYMKLLSFLKSGHDEIHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLLLCSGQKSNSVDALHDLIISTRKCCNHPYLLNPSLGSLATEGLPVEEHLDIGIKASGKLQLLENILVEAKSRDLRVMILYQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRKSGQFVFLIESSACVPSIKLSSVDTIILFDSGLDPQSDLKCLQKMSVSSKFNKLTVLRLYSYFTVEEKVLMLAKDGLALDSNVQLLSQSTNHSLLKWGASYLFSKLDDLHGSGTSVSALDISDHSTLNGVIFELSSKLGCDSKGTDCHGQSFVSRVQQNGGEYERNISLLGEREMKKLGNETHTLSWSDLLKGRNPHWRFLPVLPQSIRKRLEYFHHSLAESEKDTVDPEERKVTKDSVDPKRRKVSKDIVGTKRRGFSKSVADPKTGKVAKEIVDSNRSKVSVDIVGSKHVKKKWKNKNRSPGERKRKLNAHPLPDEMTGVSVMNKPIKKQKERPDMPKSTKLLSKPAISDLCDVLHIPENVKAVAMRLLEYVFEHYNVRCLEVSIVQAYEISVCWLAASLLKHEIDRKHSLDLAKQHLNFSCKEEEATYVYDKLQKHEKDFSNCLQNELCVEKDNTHIGPGSLTPELKDLVEDEKQKGFQHPHVLNLVKSATHEADLPRNSPTNEADLPRNFPTNEADLPRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSGSLERQSPIVSSDIPQCDDSFFEDLPILMNQVIDIDNSMNMSTHPAQLLNVEIDTVTCDRTAVPEVIQPYSVVTPICGESTSSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPENENFTCAPHDITNPGYINSDHFQAHYGPFEMPIEMPHDDADSLLIEMEQIIKKKEEAYKACEEKILQLQSDYTKEYEMLREKYNMLLQNVDTSVALKHEDLETQRNIVSKSMVLADLWSRNYSSCFYSNLQQNVHNIETSIYDSPYHPYACSMTPSVYGNIHL | 1633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa5g03003 | 1633 | ProSiteProfiles | Zinc finger PHD-type profile. | 50 | 100 | IPR019787 | - | |
| Vifa5g03003 | 1633 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 298 | 465 | IPR014001 | - | |
| Vifa5g03003 | 1633 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 333 | 465 | IPR027417 | - | |
| Vifa5g03003 | 1633 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 106 | IPR013083 | - | |
| Vifa5g03003 | 1633 | Gene3D | - | 112 | 170 | - | - | |
| Vifa5g03003 | 1633 | MobiDBLite | consensus disorder prediction | 1145 | 1175 | - | - | |
| Vifa5g03003 | 1633 | SUPERFAMILY | Chromo domain-like | 70 | 170 | IPR016197 | - | |
| Vifa5g03003 | 1633 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 113 | 167 | IPR023780 | - | |
| Vifa5g03003 | 1633 | ProSitePatterns | Zinc finger PHD-type signature. | 53 | 97 | IPR019786 | - | |
| Vifa5g03003 | 1633 | Gene3D | - | 497 | 731 | IPR027417 | - | |
| Vifa5g03003 | 1633 | Gene3D | - | 1510 | 1590 | - | - | |
| Vifa5g03003 | 1633 | MobiDBLite | consensus disorder prediction | 947 | 972 | - | - | |
| Vifa5g03003 | 1633 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 113 | 1144 | - | - | |
| Vifa5g03003 | 1633 | SMART | PHD_3 | 52 | 98 | IPR001965 | - | |
| Vifa5g03003 | 1633 | Gene3D | - | 183 | 271 | - | - | |
| Vifa5g03003 | 1633 | Coils | Coil | 1514 | 1541 | - | - | |
| Vifa5g03003 | 1633 | MobiDBLite | consensus disorder prediction | 1149 | 1163 | - | - | |
| Vifa5g03003 | 1633 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 184 | 251 | IPR000953 | - | |
| Vifa5g03003 | 1633 | SUPERFAMILY | Chromo domain-like | 204 | 251 | IPR016197 | - | |
| Vifa5g03003 | 1633 | Gene3D | - | 286 | 496 | IPR038718 | - | |
| Vifa5g03003 | 1633 | SMART | chromo_7 | 110 | 169 | IPR000953 | - | |
| Vifa5g03003 | 1633 | SMART | chromo_7 | 176 | 252 | IPR000953 | - | |
| Vifa5g03003 | 1633 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 117 | 176 | IPR000953 | - | |
| Vifa5g03003 | 1633 | MobiDBLite | consensus disorder prediction | 872 | 896 | - | - | |
| Vifa5g03003 | 1633 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 497 | 734 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa5g03003 | Vifa-Chr5 | 988642930 | 988664384 | Dispersed/Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SNF2 | Vifa5g03003 | SNF2_N | 5.2e-06 | CL0023 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa5g03003 | - | K11643 | gmx:100813574 | 1389.4 |