Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03002 ATGATTGTTGTATGTGACATGAAAGCCCAGACTCTTGTTACTGATGTTGGAGGGGATTCCTATTCAAAGTACGGCAAAGAATTGACTGAAGAGTATAAAGATAACACACTTGTGGATCCTCATGGTAAAAATGGAAAAGGTGTTGGGGAAGTTGTTTGTTACAAGTGCTTGCACCGAGGAGGAACACTCTTGTACTGTTGTGGTAAAAAATGTGGAACGAGGTATCACCCGTCTTGTTTGGATCTTCCTCTCAAATTTCTTCCTATAGGGTATTGGCATTGTATTTGTTGTAATGAGAAAAAAATAAAGCTTGGCGTGCATTCTGTTTCTAAAGGGGTAGAATCCATATTTGATTCCCAAGAAGTGGTCTCAAAAGATGAAGTTATCGAAAGGGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGTTGGATTCCAGAAAAACAGATGCTTGTTGAGGCTCCGAAGCTTTTGGAAAAGTACAAGAAGAAACAACAGGTTGTGAGGTGGAAAAAAGATTGGAGTAGACCTCAACGGTTGGTGCTAAAAAGGAAAATTATATTGTCAAAGCAAAATGCCGACACTTTTGATGGAAATGATGACAATGATTCAATTTGTCAATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATATTACATGGGAGTTAGACGATGCTTCATTTATGAGATCTTCTAAAGGCATGAAACTTGTAGAGAATTATGAAAGTCGTCAAAAGAGATCGGTTGGACTGTCAAATCCTTTTGAAGCTAACGAGGAGAGAAAAGTTTCCTTTTTTGAATTATCAGAGTTATCATCATTTGGAGATTCACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATCATTGACGATCAAATTGACCAGGAGCGGATTACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATACTCTCAACTTCAACTGGCCTCTCTACATGGGAAACAGAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAAGGAACAAAATATGTACGCGATAGCATCAGAGCATTAGAGTTTTACAATGAAGATGGTGGTAGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCACTGAGATACATTCAATGGGAAGCAATTATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCGATATTCTAAAAGCTGAGACACGACTCCTCCTCATCAGTGGACAAATCAAGGAAGATCGTGCGGATTATATGAAACTCCTTTCATTCCTTAAGTCAGGACATGATGAGATACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATACATTGCACTCAAGTGCAGTTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGCTGTTATGCTCAGGCCAAAAGTCTAATTCTGTTGATGCCCTCCACGACCTTATCATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACCCGTCACTGGGTAGTTTGGCAACTGAAGGTCTGCCTGTTGAAGAGCATTTAGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAATATTCTCGTTGAAGCTAAAAGTCGTGATCTAAGAGTGATGATATTATATCAGTCTAGTGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAACGACTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAAAAAGTGGACAATTTGTTTTCTTGATAGAGAGCAGTGCTTGTGTCCCTAGCATTAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCGCAAAGTGACCTAAAATGCCTACAAAAAATGTCCGTCAGCTCAAAGTTCAATAAGTTAACAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGACGGTTTGGCTCTTGATAGCAACGTGCAGTTGCTTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGATTTGCATGGAAGCGGCACCTCGGTCTCTGCTTTAGACATCTCTGATCATTCAACTCTGAATGGTGTAATCTTTGAATTATCATCCAAATTGGGTTGTGACAGCAAGGGGACTGATTGTCACGGACAGTCATTCGTATCGAGAGTACAACAGAATGGAGGGGAATATGAAAGAAACATTTCATTGCTAGGAGAAAGAGAGATGAAGAAATTGGGCAATGAAACACATACTCTTTCATGGAGTGATCTCCTAAAAGGAAGGAATCCTCACTGGAGGTTTTTGCCTGTTTTGCCTCAAAGTATCAGAAAAAGACTTGAGTATTTTCATCACTCACTAGCAGAATCTGAGAAGGATACTGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAGTGTCCAAGGATATTGTTGGTACTAAGAGGAGGGGATTCTCAAAGAGTGTTGCTGATCCTAAGACTGGGAAAGTTGCCAAGGAAATTGTTGATTCCAATCGCAGTAAAGTTTCCGTGGATATTGTTGGTTCCAAACATGTGAAAAAAAAGTGGAAGAACAAGAATCGGAGTCCTGGTGAAAGGAAAAGGAAATTAAACGGAGTATCTGTAATGAACAAACCAATTAAAAAACAAAAGGAGCGGCCTGACATGCCCAAGAGCACCAAACTCTTGTCAAAGCCTGCTATTTCAGATCTCTGTGATGTTCTACACATTCCGGAAAATGTCAAGGCTGTCGCCATGAGGCTTCTTGAGTATGTATTTGAACATTACAACGTTCGTTGCCTGGAAGTTTCTATAGTGCAGGCATATGAAATATCGGTGTGTTGGCTTGCAGCTTCTTTATTGAAACACGAGATTGATAGGAAACATTCACTTGATCTTGCAAAACAGCACTTGAATTTCAGTTGCAAGGAGGAAGAGGCAACTTATGTTTACGATAAACTGCAGAAGCATGAGAAAGATTTTTCAAACTGTTTACAAAATGAACTTTGTGTTGAGAAAGATAATACACATATTGGTCCAGGCTCCTTGACACCTGAGCTGAAAGATTTGGTAGAGGATGAGAAACAAAAGGGTTTTCAGCATCCTCATGTTTTAAATCTTGTGAAATCTGCCACACATGAAGCTGATCTTCCAAGAAACTCTCCCACAAATGAAGCTGATCTTCCAAGAAACTTTCCCACGAATGAAGCTGATCTTCCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTCCACAATGTGATGACAGTTTTTTTGAAGATCTTCCAATTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCATCCTGCACAACTTCTCAATGTTGAGATAGATACTGTAACTTGTGATAGAACTGCTGTTCCTGAGGTAATACAGCCGTACAGTGTAGTGACTCCTATATGTGGTGAGTCAACTAGTTCAGAGTTTTCTGAGTGGCCTTTACCATATACGCAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGAGAATGAAAATTTCACTTGTGCTCCTCATGACATTACCAATCCTGGATATATAAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATGCCACATGATGATGCAGACTCATTATTAATAGAAATGGAGCAAATAATAAAGAAGAAGGAAGAAGCCTACAAGGCATGTGAAGAAAAAATATTGCAGCTGCAGTCTGACTACACAAAGGAGTACGAAATGTTAAGGGAAAAGTACAATATGTTGCTTCAGAATGTTGATACTTCAGTAGCATTAAAGCATGAGGACCTTGAGACACAGCGTAATATCGTTTCCAAGAGTATGGTATTAGCTGATCTTTGGAGCCGAAATTATAGTAGTTGTTTTTATAGTAATCTGCAGCAGAATGTACATAACATAGAAACATCCATCTATGATTCACCATACCACCCGTATGCCTGCTCAATGACACCATCAGTTTATGGAAACATCCATCTATGA 4875 0.3908 MIVVCDMKAQTLVTDVGGDSYSKYGKELTEEYKDNTLVDPHGKNGKGVGEVVCYKCLHRGGTLLYCCGKKCGTRYHPSCLDLPLKFLPIGYWHCICCNEKKIKLGVHSVSKGVESIFDSQEVVSKDEVIEREYFVKYQGLAHAHNCWIPEKQMLVEAPKLLEKYKKKQQVVRWKKDWSRPQRLVLKRKIILSKQNADTFDGNDDNDSICQYEWLVKWTGLGYDHITWELDDASFMRSSKGMKLVENYESRQKRSVGLSNPFEANEERKVSFFELSELSSFGDSPGLYNQHLSYVNKLRMCWHKGQSAVIIDDQIDQERITKVILYISSLSCNVKRPFLILSTSTGLSTWETEFLNLAPSANLVVYKGTKYVRDSIRALEFYNEDGGSSFQILLSSSDIIIEDLHALRYIQWEAIIIDECHRPRILGQFDNLDILKAETRLLLISGQIKEDRADYMKLLSFLKSGHDEIHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLLLCSGQKSNSVDALHDLIISTRKCCNHPYLLNPSLGSLATEGLPVEEHLDIGIKASGKLQLLENILVEAKSRDLRVMILYQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRKSGQFVFLIESSACVPSIKLSSVDTIILFDSGLDPQSDLKCLQKMSVSSKFNKLTVLRLYSYFTVEEKVLMLAKDGLALDSNVQLLSQSTNHSLLKWGASYLFSKLDDLHGSGTSVSALDISDHSTLNGVIFELSSKLGCDSKGTDCHGQSFVSRVQQNGGEYERNISLLGEREMKKLGNETHTLSWSDLLKGRNPHWRFLPVLPQSIRKRLEYFHHSLAESEKDTVDPEERKVTKDSVDPKRRKVSKDIVGTKRRGFSKSVADPKTGKVAKEIVDSNRSKVSVDIVGSKHVKKKWKNKNRSPGERKRKLNGVSVMNKPIKKQKERPDMPKSTKLLSKPAISDLCDVLHIPENVKAVAMRLLEYVFEHYNVRCLEVSIVQAYEISVCWLAASLLKHEIDRKHSLDLAKQHLNFSCKEEEATYVYDKLQKHEKDFSNCLQNELCVEKDNTHIGPGSLTPELKDLVEDEKQKGFQHPHVLNLVKSATHEADLPRNSPTNEADLPRNFPTNEADLPRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSGSLERQSPIVSSDIPQCDDSFFEDLPILMNQVIDIDNSMNMSTHPAQLLNVEIDTVTCDRTAVPEVIQPYSVVTPICGESTSSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPENENFTCAPHDITNPGYINSDHFQAHYGPFEMPIEMPHDDADSLLIEMEQIIKKKEEAYKACEEKILQLQSDYTKEYEMLREKYNMLLQNVDTSVALKHEDLETQRNIVSKSMVLADLWSRNYSSCFYSNLQQNVHNIETSIYDSPYHPYACSMTPSVYGNIHL 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03002 1624 ProSiteProfiles Zinc finger PHD-type profile. 50 100 IPR019787 -
Vifa5g03002 1624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 465 IPR014001 -
Vifa5g03002 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 734 IPR027417 -
Vifa5g03002 1624 SUPERFAMILY Chromo domain-like 70 170 IPR016197 -
Vifa5g03002 1624 Pfam Chromo (CHRromatin Organisation MOdifier) domain 113 167 IPR023780 -
Vifa5g03002 1624 ProSitePatterns Zinc finger PHD-type signature. 53 97 IPR019786 -
Vifa5g03002 1624 Gene3D - 1501 1581 - -
Vifa5g03002 1624 MobiDBLite consensus disorder prediction 1140 1154 - -
Vifa5g03002 1624 SMART PHD_3 52 98 IPR001965 -
Vifa5g03002 1624 Gene3D - 497 731 IPR027417 -
Vifa5g03002 1624 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 113 1135 - -
Vifa5g03002 1624 Gene3D - 183 271 - -
Vifa5g03002 1624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 106 IPR013083 -
Vifa5g03002 1624 Gene3D - 286 496 IPR038718 -
Vifa5g03002 1624 ProSiteProfiles Chromo and chromo shadow domain profile. 184 251 IPR000953 -
Vifa5g03002 1624 SUPERFAMILY Chromo domain-like 204 251 IPR016197 -
Vifa5g03002 1624 Coils Coil 1505 1532 - -
Vifa5g03002 1624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 465 IPR027417 -
Vifa5g03002 1624 SMART chromo_7 110 169 IPR000953 -
Vifa5g03002 1624 SMART chromo_7 176 252 IPR000953 -
Vifa5g03002 1624 Gene3D - 112 170 - -
Vifa5g03002 1624 ProSiteProfiles Chromo and chromo shadow domain profile. 117 176 IPR000953 -
Vifa5g03002 1624 MobiDBLite consensus disorder prediction 1136 1166 - -
Vifa5g03002 1624 MobiDBLite consensus disorder prediction 872 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03002 Vifa-Chr5 988642930 988664384 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g03002 SNF2_N 5.1e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03002 - K11643 gmx:100813574 1373.99