Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g03001 ATGATTGTTGTATGTGACATGAAAGCCCAGACTCTTGTTACTGATGTTGGAGGGGATTCCTATTCAAAGTACGGCAAAGAATTGACTGAAGAGTATAAAGATAACACACTTGTGGATCCTCATGGTAAAAATGGAAAAGGTGTTGGGGAAGTTGTTTGTTACAAGTGCTTGCACCGAGGAGGAACACTCTTGTACTGTTGTGGTAAAAAATGTGGAACGAGGTATCACCCGTCTTGTTTGGATCTTCCTCTCAAATTTCTTCCTATAGGGTATTGGCATTGTATTTGTTGTAATGAGAAAAAAATAAAGCTTGGCGTGCATTCTGTTTCTAAAGGGGTAGAATCCATATTTGATTCCCAAGAAGTGGTCTCAAAAGATGAAGTTTATCACTTGGTGCCAGTTATCGAAAGGGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGTTGGATTCCAGAAAAACAGATGCTTGTTGAGGCTCCGAAGCTTTTGGAAAAGTACAAGAAGAAACAACAGGTTGTGAGGTGGAAAAAAGATTGGAGTAGACCTCAACGGTTGGTGCTAAAAAGGAAAATTATATTGTCAAAGCAAAATGCCGACACTTTTGATGGAAATGATGACAATGATTCAATTTGTCAATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATATTACATGGGAGTTAGACGATGCTTCATTTATGAGATCTTCTAAAGGCATGAAACTTGTAGAGAATTATGAAAGTCGTCAAAAGAGATCGGTTGGACTGTCAAATCCTTTTGAAGCTAACGAGGAGAGAAAAGTTTCCTTTTTTGAATTATCAGAGTTATCATCATTTGGAGATTCACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCTGTTATCATTGACGATCAAATTGACCAGGAGCGGATTACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATACTCTCAACTTCAACTGGCCTCTCTACATGGGAAACAGAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAAGGAACAAAATATGTACGCGATAGCATCAGAGCATTAGAGTTTTACAATGAAGATGGTGGTAGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCACTGAGATACATTCAATGGGAAGCAATTATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCGATATTCTAAAAGCTGAGACACGACTCCTCCTCATCAGTGGACAAATCAAGGAAGATCGTGCGGATTATATGAAACTCCTTTCATTCCTTAAGTCAGGACATGATGAGATACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATACATTGCACTCAAGTGCAGTTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGCTGTTATGCTCAGGCCAAAAGTCTAATTCTGTTGATGCCCTCCACGACCTTATCATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACCCGTCACTGGGTAGTTTGGCAACTGAAGGTCTGCCTGTTGAAGAGCATTTAGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAATATTCTCGTTGAAGCTAAAAGTCGTGATCTAAGAGTGATGATATTATATCAGTCTAGTGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAACGACTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAAAAAGTGGACAATTTGTTTTCTTGATAGAGAGCAGTGCTTGTGTCCCTAGCATTAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCGCAAAGTGACCTAAAATGCCTACAAAAAATGTCCGTCAGCTCAAAGTTCAATAAGTTAACAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGACGGTTTGGCTCTTGATAGCAACGTGCAGTTGCTTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGATTTGCATGGAAGCGGCACCTCGGTCTCTGCTTTAGACATCTCTGATCATTCAACTCTGAATGGTGTAATCTTTGAATTATCATCCAAATTGGGTTGTGACAGCAAGGGGACTGATTGTCACGGACAGTCATTCGTATCGAGAGTACAACAGAATGGAGGGGAATATGAAAGAAACATTTCATTGCTAGGAGAAAGAGAGATGAAGAAATTGGGCAATGAAACACATACTCTTTCATGGAGTGATCTCCTAAAAGGAAGGAATCCTCACTGGAGGTTTTTGCCTGTTTTGCCTCAAAGTATCAGAAAAAGACTTGAGTATTTTCATCACTCACTAGCAGAATCTGAGAAGGATACTGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAGTGTCCAAGGATATTGTTGGTACTAAGAGGAGGGGATTCTCAAAGAGTGTTGCTGATCCTAAGACTGGGAAAGTTGCCAAGGAAATTGTTGATTCCAATCGCAGTAAAGTTTCCGTGGATATTGTTGGTTCCAAACATGTGAAAAAAAAGTGGAAGAACAAGAATCGGAGTCCTGGTGAAAGGAAAAGGAAATTAAACGGAGTATCTGTAATGAACAAACCAATTAAAAAACAAAAGGAGCGGCCTGACATGCCCAAGAGCACCAAACTCTTGTCAAAGCCTGCTATTTCAGATCTCTGTGATGTTCTACACATTCCGGAAAATGTCAAGGCTGTCGCCATGAGGCTTCTTGAGTATGTATTTGAACATTACAACGTTCGTTGCCTGGAAGTTTCTATAGTGCAGGCATATGAAATATCGGTGTGTTGGCTTGCAGCTTCTTTATTGAAACACGAGATTGATAGGAAACATTCACTTGATCTTGCAAAACAGCACTTGAATTTCAGTTGCAAGGAGGAAGAGGCAACTTATGTTTACGATAAACTGCAGAAGCATGAGAAAGATTTTTCAAACTGTTTACAAAATGAACTTTGTGTTGAGAAAGATAATACACATATTGGTCCAGGCTCCTTGACACCTGAGCTGAAAGATTTGGTAGAGGATGAGAAACAAAAGGGTTTTCAGCATCCTCATGTTTTAAATCTTGTGAAATCTGCCACACATGAAGCTGATCTTCCAAGAAACTCTCCCACAAATGAAGCTGATCTTCCAAGAAACTTTCCCACGAATGAAGCTGATCTTCCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAAGAAAGTCTCCCACAACAGTGCTATTTTCTCAAAACCAGATTTATACCGAAAACTTTCATGAAGAACCTTATATAGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTATGAAACTGGAAGCAGATGCTACTTCCATAGAATGTGTTCCAGATGAGGGAATAAATTCCATAAACTTGGTAGCAGCTGAAGTTTCATCGCTCGAGCACTGGAATGAAGTCCCCAATTTAAGTAATGATTTCAATAATGTCAACCATGTTTCAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTCCACAATGTGATGACAGTTTTTTTGAAGATCTTCCAATTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCATCCTGCACAACTTCTCAATGTTGAGATAGATACTGTAACTTGTGATAGAACTGCTGTTCCTGAGGTAATACAGCCGTACAGTGTAGTGACTCCTATATGTGGTGAGTCAACTAGTTCAGAGTTTTCTGAGTGGCCTTTACCATATACGCAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGAGAATGAAAATTTCACTTGTGCTCCTCATGACATTACCAATCCTGGATATATAAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATGCCACATGATGATGCAGACTCATTATTAATAGAAATGGAGCAAATAATAAAGAAGAAGGAAGAAGCCTACAAGGCATGTGAAGAAAAAATATTGCAGCTGCAGTCTGACTACACAAAGGAGTACGAAATGTTAAGGGAAAAGTACAATATGTTGCTTCAGAATGTTGATACTTCAGTAGCATTAAAGCATGAGGACCTTGAGACACAGCGTAATATCGTTTCCAAGAGTATGGTATTAGCTGATCTTTGGAGCCGAAATTATAGTAGTTGTTTTTATAGTAATCTGCAGCAGAATGTACATAACATAGAAACATCCATCTATGATTCACCATACCACCCGTATGCCTGCTCAATGACACCATCAGTTTATGGAAACATCCATCTATGA 4893 0.391 MIVVCDMKAQTLVTDVGGDSYSKYGKELTEEYKDNTLVDPHGKNGKGVGEVVCYKCLHRGGTLLYCCGKKCGTRYHPSCLDLPLKFLPIGYWHCICCNEKKIKLGVHSVSKGVESIFDSQEVVSKDEVYHLVPVIEREYFVKYQGLAHAHNCWIPEKQMLVEAPKLLEKYKKKQQVVRWKKDWSRPQRLVLKRKIILSKQNADTFDGNDDNDSICQYEWLVKWTGLGYDHITWELDDASFMRSSKGMKLVENYESRQKRSVGLSNPFEANEERKVSFFELSELSSFGDSPGLYNQHLSYVNKLRMCWHKGQSAVIIDDQIDQERITKVILYISSLSCNVKRPFLILSTSTGLSTWETEFLNLAPSANLVVYKGTKYVRDSIRALEFYNEDGGSSFQILLSSSDIIIEDLHALRYIQWEAIIIDECHRPRILGQFDNLDILKAETRLLLISGQIKEDRADYMKLLSFLKSGHDEIHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLLLCSGQKSNSVDALHDLIISTRKCCNHPYLLNPSLGSLATEGLPVEEHLDIGIKASGKLQLLENILVEAKSRDLRVMILYQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRKSGQFVFLIESSACVPSIKLSSVDTIILFDSGLDPQSDLKCLQKMSVSSKFNKLTVLRLYSYFTVEEKVLMLAKDGLALDSNVQLLSQSTNHSLLKWGASYLFSKLDDLHGSGTSVSALDISDHSTLNGVIFELSSKLGCDSKGTDCHGQSFVSRVQQNGGEYERNISLLGEREMKKLGNETHTLSWSDLLKGRNPHWRFLPVLPQSIRKRLEYFHHSLAESEKDTVDPEERKVTKDSVDPKRRKVSKDIVGTKRRGFSKSVADPKTGKVAKEIVDSNRSKVSVDIVGSKHVKKKWKNKNRSPGERKRKLNGVSVMNKPIKKQKERPDMPKSTKLLSKPAISDLCDVLHIPENVKAVAMRLLEYVFEHYNVRCLEVSIVQAYEISVCWLAASLLKHEIDRKHSLDLAKQHLNFSCKEEEATYVYDKLQKHEKDFSNCLQNELCVEKDNTHIGPGSLTPELKDLVEDEKQKGFQHPHVLNLVKSATHEADLPRNSPTNEADLPRNFPTNEADLPRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSRKSPTTVLFSQNQIYTENFHEEPYIAHEIATSQKNPGSFPMKLEADATSIECVPDEGINSINLVAAEVSSLEHWNEVPNLSNDFNNVNHVSGSLERQSPIVSSDIPQCDDSFFEDLPILMNQVIDIDNSMNMSTHPAQLLNVEIDTVTCDRTAVPEVIQPYSVVTPICGESTSSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPENENFTCAPHDITNPGYINSDHFQAHYGPFEMPIEMPHDDADSLLIEMEQIIKKKEEAYKACEEKILQLQSDYTKEYEMLREKYNMLLQNVDTSVALKHEDLETQRNIVSKSMVLADLWSRNYSSCFYSNLQQNVHNIETSIYDSPYHPYACSMTPSVYGNIHL 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g03001 1630 ProSiteProfiles Zinc finger PHD-type profile. 50 100 IPR019787 -
Vifa5g03001 1630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 471 IPR014001 -
Vifa5g03001 1630 Gene3D - 1507 1587 - -
Vifa5g03001 1630 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 119 1141 - -
Vifa5g03001 1630 SUPERFAMILY Chromo domain-like 70 176 IPR016197 -
Vifa5g03001 1630 ProSitePatterns Zinc finger PHD-type signature. 53 97 IPR019786 -
Vifa5g03001 1630 Coils Coil 1511 1538 - -
Vifa5g03001 1630 ProSiteProfiles Chromo and chromo shadow domain profile. 111 182 IPR000953 -
Vifa5g03001 1630 MobiDBLite consensus disorder prediction 1142 1172 - -
Vifa5g03001 1630 MobiDBLite consensus disorder prediction 878 902 - -
Vifa5g03001 1630 SMART PHD_3 52 98 IPR001965 -
Vifa5g03001 1630 Gene3D - 189 277 - -
Vifa5g03001 1630 Gene3D - 292 502 IPR038718 -
Vifa5g03001 1630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 106 IPR013083 -
Vifa5g03001 1630 Gene3D - 503 737 IPR027417 -
Vifa5g03001 1630 ProSiteProfiles Chromo and chromo shadow domain profile. 190 257 IPR000953 -
Vifa5g03001 1630 Pfam Chromo (CHRromatin Organisation MOdifier) domain 113 173 IPR023780 -
Vifa5g03001 1630 Gene3D - 112 176 - -
Vifa5g03001 1630 SUPERFAMILY Chromo domain-like 210 257 IPR016197 -
Vifa5g03001 1630 SMART chromo_7 128 175 IPR000953 -
Vifa5g03001 1630 SMART chromo_7 182 258 IPR000953 -
Vifa5g03001 1630 MobiDBLite consensus disorder prediction 1146 1160 - -
Vifa5g03001 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 471 IPR027417 -
Vifa5g03001 1630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 740 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g03001 Vifa-Chr5 988642930 988664384 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa5g03001 SNF2_N 5.1e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g03001 - K11643 gmx:100813574 1367.44