Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02998 ATGGAACCAGTAGCAGCAGCCATTACAAAAAACAAGACCGGTTATGATTCATTCTGGTTCACCAATGTTAATATGAAAGTGAATAGCAGCGATCCTTTGAATTGGGGTATTGTGGCGGAGGCAATGAAAGGGAGTCACTTAGATGAGGTGAAGCGTATGGTGGAACAATACCGGAAGCCGGTGATCCGTCTTGGTGATGAGACACTTACCATTTCTCACGTGGCTGCCATTGCACACAACCATGGTGTGAAGGTGGAGCTTTCAGAATCCGTTAGGACCGGAGTTAAAGCCAGTAGTGATTGGGTGATGGAAAGTGTGAAAAATGGCACGGACACTTACGGTATTACAACAGGTTTTGGCTCCACGAGTCGCCGTCGAACCAAACAGCATTGCACTTTACAGAAAGAACTAATCAGGTTTCTGAATGCTGGAATATTTGGAACTGGAAGTGAGTCAAACCACACACTACCTCACACAACAACAAGAGCTGCTATGCTTGTGAGAATCAACACACTTCTCCAAGGCTATTCAGGAATTAGATTTGAAATTTTAGAAGCCCTTGTCAAGCTCCTTAACAACAACGTCACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATATTATTCCTCTTTCTTACATTGTTGGTTTGCTAACTGGAAGACCAAATTCCAAAGCTCGTGGACTCTATGGAGAAATACTTAATGCCAAAGAAGCTTTTCAATCAGCTGAAATCAATGTTGATTTCTTTGAATTACAATCAAAAGAAGGTCTTGCACTTACTAATGGAACTTCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCTAACATCTTGGTTGTCTTGTCTGAAGTCCTATCAGCTATTTTTGTTGAAGTTATGCAAGGGAAACCTGAATTTACTGATCATTTGACACATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCAGCTGCTATTATGGAATATATTTTGGATGGAAGTGCTTATGTCAAAGCATCTAAGGAATTTCATGAGACGGATCCTTTGGAGAAGCCAAAACAAGATAGATATGCAATTAGAACTTCGCCACAATGGCTTGGTCCTCTAATTGAAGTAATTAGATTCTCTACTAAGTCAATTGAGAGGGAGATTAACTCTGTTAATGACAACCCTTTGATTGATGTATCAAGAAACAAAGCTTTGCATGGTGGAAATTTTCAAGGAACGCCTATTGGTGTATCTATGGATAATACACGTTTGGCTCTTGCATCTATTGGTAAACTCATGTTTGCTCAATTTTCCGAGCTTGTCAATGATTTTTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCTTAGCTTGGATTATGGTTTCAAAGGATCTGAAATTGCCATGGCTTCTTATTGTTCTGAGTTACAATATCTTGCAAATCCAGTTACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAGACATATGAAGCAATTGAGATCCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATAGACTTAAGACATTTGGAGGAGAACTTGAAAAGCTCGGTTAAGAACATTGTGAGCCAAGTTGCTAAAAGGACCCTTACCACTGGTGTCAATGGAGAACTCCATCCTTCTAGGTTTTGTGAAAAAGACTTGTTGAGAGTGGTTGATAGGGAGCATGTGTTTTCCTATATTGATGATCCTTGTAGTGCTACATATCCATTGATGCAAAAATTGAGACAAGTGTTAGTGGATCATGCATTAGTAAATGGTGAATATGAGAAGAATTTGAACACATCAATCTTCCAAAAGAATGCAACTTTTGAGGATGAGTTGAAGACCCTTTTGCCAAAAGATGTTGAAAGTAGTAGGGATGCATATGATAGTGGAAATCCAAGAGTTCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTATAGGTTTGTGAGACAAGAGTTGGGGACTTGTATGCTAACAGGAGAAAAAGTCATTTCACCAGGTGAAGAGTGTGACAAATTATTCACAGCCATGTGTGAGGGAAAAATCATTGATCCTCTTCTTCAATGCTTGGTTGAGTGGAATGGTTCTCGTGTTCAAATTTGTTAA 2166 0.3957 MEPVAAAITKNKTGYDSFWFTNVNMKVNSSDPLNWGIVAEAMKGSHLDEVKRMVEQYRKPVIRLGDETLTISHVAAIAHNHGVKVELSESVRTGVKASSDWVMESVKNGTDTYGITTGFGSTSRRRTKQHCTLQKELIRFLNAGIFGTGSESNHTLPHTTTRAAMLVRINTLLQGYSGIRFEILEALVKLLNNNVTPCLPLRGTITASGDIIPLSYIVGLLTGRPNSKARGLYGEILNAKEAFQSAEINVDFFELQSKEGLALTNGTSVGSGLASIVLFEANILVVLSEVLSAIFVEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSAYVKASKEFHETDPLEKPKQDRYAIRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNLSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKSSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFSYIDDPCSATYPLMQKLRQVLVDHALVNGEYEKNLNTSIFQKNATFEDELKTLLPKDVESSRDAYDSGNPRVPNKINGCRSYPLYRFVRQELGTCMLTGEKVISPGEECDKLFTAMCEGKIIDPLLQCLVEWNGSRVQIC 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02998 721 Pfam Aromatic amino acid lyase 69 545 IPR001106 -
Vifa5g02998 721 NCBIfam phenylalanine ammonia-lyase 31 710 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vifa5g02998 721 FunFam Phenylalanine ammonia-lyase 534 655 - -
Vifa5g02998 721 FunFam Phenylalanine ammonia-lyase 22 267 - -
Vifa5g02998 721 CDD PAL-HAL 67 531 IPR001106 -
Vifa5g02998 721 Gene3D - 534 655 IPR023144 -
Vifa5g02998 721 Gene3D - 22 267 IPR024083 -
Vifa5g02998 721 PANTHER HISTIDINE AMMONIA-LYASE 28 721 IPR001106 -
Vifa5g02998 721 FunFam Phenylalanine ammonia-lyase 268 577 - -
Vifa5g02998 721 SUPERFAMILY L-aspartase-like 31 721 IPR008948 GO:0003824
Vifa5g02998 721 Gene3D Fumarase/aspartase (Central domain) 269 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02998 Vifa-Chr5 988257798 988260046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02998 24 721 Monolignol Biosynthesis Gene Families AT2G37040 77.110 0.0 1159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02998 K10775 - gmx:100811101 1175.61