Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02996 ATGCAAGGGAAGCCTGAATTTACTGATCATTTGACACATAAGTTGAAGCATCATCCCGGTCAAATTGAGGCTGCTGCTATTATGGAACATATTTTGGATGGAAGTGCTTATGTCAAAGCAGCTAAGAAGTTGCATGAGATGGATCCTTTGCAGAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTCTAATTGAAGTCATTAGATTCTCTACTAAGTCAATTGAGCGTGAGATCAACTCGGTTAATGATAACCCTTTGATTGATGTATCAAGAAACAAGGCTTTGCATGGCGGAAATTTTCAAGGAACGCCTATTGGAGTATCCATGGATAATACACGTCTAGCTCTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAACGGGTTGCCATCGAATCTTTCAGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAAGGATCTGAAATTGCCATGGCTTCTTATTGTTCCGAGTTACAATATCTTGCAAATCCAGTTACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAGACATATGAAGCTATTGAGATCCTTCAACTCATGTCTTCTACATTCTTGATTGCACTATGCCAAGCAATTGACTTGAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAGAACATTGTAAGCCAAGTTGCTAAGAGGACCCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCTAGGTTTTGTGAAAAGGACTTATTGAGAGTGGTTGACAGGGAGCATGTGTTTGCCTACATTGATGATCCTTGTAGTGCTACATATCAATTGATGCAAAAGCTGAGGCAGGTGTTAGTGGATCATGCATTAGTTAATGGAGAAAGTGAGAAGAGTATGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTTTTGCCAAAAGAGGTCGAAAGTACTAGGGCTTCATATGAGAGTGGAAATCCAACAGTTCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTATAGGTTTGTGAGACAAGAGTTGGGGACTGGTTTGCTAACAGGAGAAAATGTCATTTCACCAGGTGAGGAGTGTGATAAATTGTTCACAGCTATGTGTCAAGGAAAGATCATTGATCCTCTTCTTGAATGCTTGGGTGAGTGGAATGGTGCTCCACTTCCAATTTGTTAA 1272 0.4025 MQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSATYQLMQKLRQVLVDHALVNGESEKSMNTSIFQKIATFEDELKTLLPKEVESTRASYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGENVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02996 423 FunFam Phenylalanine ammonia-lyase 236 357 - -
Vifa5g02996 423 Pfam Aromatic amino acid lyase 1 248 IPR001106 -
Vifa5g02996 423 Gene3D Fumarase/aspartase (Central domain) 1 418 - -
Vifa5g02996 423 PANTHER HISTIDINE AMMONIA-LYASE 1 423 IPR001106 -
Vifa5g02996 423 Gene3D - 236 357 IPR023144 -
Vifa5g02996 423 SUPERFAMILY L-aspartase-like 1 423 IPR008948 GO:0003824
Vifa5g02996 423 NCBIfam phenylalanine ammonia-lyase 1 412 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02996 Vifa-Chr5 988195167 988196438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02996 1 423 Monolignol Biosynthesis Gene Families AT2G37040 83.215 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02996 K10775 - gmx:100811101 783.482