Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02988 ATGGAAGCAGTAGCAGCAGCCATAACAAAAAACAACAGTTACGAGTCATTTTGCTTGACGAATGCTAAGAATAATAACATGAAAGTGAATGGCGCCGATCCTTTGAATTGGGGTATTGCGGCGGAGGCAATGAAAGGGAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTATCGGAAGCCCGTGGTTCGTCTTGGTGGTGAGACGCTGACGATTTCTCAGGTGGCTGCCATTGCCGCACATGATCATGGTGTGAAGGTGGAGCTGTCAGAATCTGCTAGGGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGGAGAGTATGAATAAAGGCACTGACAGTTATGGTGTTACCACCGGTTTCGGCGCCACCTCTCACCGTCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAACTTATCAGGTTTTTGAATGCTGGAATATTTGGAAATGGAACTGAGTCAAGCCATACACTTCCACATACAGCAACGAGAGCCGCTATGCTTGTGAGAATCAACACACTTCTCCAAGGCTATTCAGGGATTAGATTTGAAATCTTGGAAGCGATAACAAAACTCATTAACAACAATGTCACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGAGATTTAGTCCCTCTTTCTTATATTGCTGGTTTACTAACTGGAAGACCCAATTCCAAAGCTCATGGACCATCCGGAGAAATTCTCAATGCAAAAGAAGCTTTTCAATCAGCTGGAATCAGTGCTGATTTCTTTGAATTACAGCCAAAAGAAGGGCTTGCACTTGTTAATGGAACCGCTGTAGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCTAACATATTGGCTGTCTTGTCTGAAGTCCTATCGGCTATTTTCGCTGAAGTTATGCAAGGGAAGCCTGAATTTACTGATCATTTGACACATAAGTTGAAGCATCATCCCGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTGCTTATGTCAAAGCAGCTAAGAAGTTGCATGAGATGGATCCTTTGCAGAAGCCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTCTGATTGAAGTCATTAGATTCTCTACTAAGTCAATTGAGAGGGAGATTAACTCTGTTAATGACAACCCTTTGATTGATGTATCAAGAAACAAAGCTTTGCATGGTGGAAATTTTCAAGGAACGCCTATTGGTGTATCTATGGATAATACACGTTTGGCTCTTGCATCTATTGGTAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAACGGGTTGCCATCGAATCTTTCAGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAAGGATCTGAAATTGCCATGGCTTCTTATTGTTCCGAGTTACAATATCTTGCAAATCCAGTTACAACTCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGGAAGACATATGAAGCAATTGAGATCCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATAGACTTAAGACATTTGGAGGAGAACTTGAAAAGCTCGGTTAAGAACATTGTGAGCCAAGTTGCTAAAAGGACCCTTACCACTGGTGTCAATGGAGAACTTCATCCTTCTAGGTTTTGTGAAAAAGACTTGTTGAGAGTGGTTGATAGGGAGCATGTGTTTGCCTATATTGATGATCCTTGTAGTGCTACATATCCATTAATGCAAAAGCTGAGGCAGGTGTTAGTGGATCACGCATTAGTTAATGGAGAAAGTGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACCCTTTTGCCAAAAGAGGTCGAAAGTACTAGGGCTTCATATGAGAGTGGAAATCCAACAGTTCCAAACAAGATCAATGGATGCAGATCTTATCCACTTTATAGGTTTGTGAGAGAAGAGTTGGGGACTGGTTTGCTAACAGGAGAAAATGTCATTTCACCGGGTGAGGAGTGTGATAAATTGTTCACAGCTATGTGTCAAGGAAAGATCATTGATCCTCTTCTTGAATGCTTGGGTGAGTGGAATGGTGCTCCACTTCCAATTTGTTAA 2175 0.4198 MEAVAAAITKNNSYESFCLTNAKNNNMKVNGADPLNWGIAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQSAGISADFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAIDLRHLEENLKSSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALVNGESEKNLNTSIFQKIATFEDELKTLLPKEVESTRASYESGNPTVPNKINGCRSYPLYRFVREELGTGLLTGENVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02988 724 Pfam Aromatic amino acid lyase 71 548 IPR001106 -
Vifa5g02988 724 FunFam Phenylalanine ammonia-lyase 271 580 - -
Vifa5g02988 724 NCBIfam phenylalanine ammonia-lyase 33 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vifa5g02988 724 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Vifa5g02988 724 Gene3D - 24 270 IPR024083 -
Vifa5g02988 724 FunFam Phenylalanine ammonia-lyase 24 270 - -
Vifa5g02988 724 Gene3D - 537 658 IPR023144 -
Vifa5g02988 724 SUPERFAMILY L-aspartase-like 33 724 IPR008948 GO:0003824
Vifa5g02988 724 CDD PAL-HAL 69 534 IPR001106 -
Vifa5g02988 724 PANTHER HISTIDINE AMMONIA-LYASE 29 724 IPR001106 -
Vifa5g02988 724 FunFam Phenylalanine ammonia-lyase 537 658 - -
Vifa5g02988 724 Gene3D Fumarase/aspartase (Central domain) 271 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02988 Vifa-Chr5 987115871 987118608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02988 17 724 Monolignol Biosynthesis Gene Families AT2G37040 82.486 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02988 K10775 - gmx:100803857 1279.62