Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02983 ATGAGTGAGGAGTCGGAGGAGAAGTTGATTGATGGGAACAATGATGTGGATCCTCAGTTATGGCGTGCTATTGCTGGAGGAATGGTTCAAATTCCACAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCACGCGGAGCATGCGTATGAACCAGTTAATTTTAGTGTTGACGTCAAAGTTCCATTTTTCATTCCATGTAGAGTTGCAGCTATTCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTTTGCATATAAGCGAGGCTGGTTTTGATGATGGCTGTGTTGGTGGCGTCGATGATATGTCTGAGACTAAGAATAAATATCAATCTTATACGAAAACCTTGACACAATCTGATGCGAACAATGGTGGTGGATTCTCTTGTCCTAGGTATTGTGCAGAAACACTTTTGCCTCCATTAGACTATTCAGGTACCCCTCCTTCTCAGTACATTTCTGCCACGGATGTTCATGGCCAGACGTGGGAATTCAAACATGTTTATAGGGGCACGCCGAAGCGGCATCTTTTAACAACCAACTGGAGTGATTTTGTAACCGACAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTTTGAGGGCTGAAAACGGTGATCTTCATATTGGAATTCGAAGGTCTACAAGACGAAACGAAATTGGATTTAACCCTTCATCCAAGAGGAAACCTGGTAGTGAAATTGGAATCCGTATTGGACCATCATACTTGGGACTTACCTCGTCTTCGGGGGAGAAAGATAATAAACTTCAAAAGAATGATAAAGAAAAAGGATTGAAAATAAGTGATAAGATTATGGGTAGGGGAAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAGACTTGGTGTAAATATGCAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTCAATTAGAACAGCACTTCAGATTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCTTTGAAACTGAAGACTCGTCAAGGATAAGTTGGTTTATGGGAACAATTACTTCAGTTCAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGATGAACCTGAGTTACTTAAAAATACGAAAAGGGTGAATCCGTGGCAAGTGGAAATAGTATCGCACATGCCTTCAATCCCTTTTTCCTCTTTCTTGCCACCATCGAGGAAGAAACTGAGATTGTCTCAATACCCAGATTACCCTATTGGTGGCCAATTTTCAATGCCAACTTTTCCAAACTACATTCAAACTCCAAATGTTCCAATTTTTCATTTACCAAAAACTAGTCCTGCTGGTATGCAGGGAGCCAGGCATGATCCTTTTGGTGTCTCTTTATCAGACATTCACATCAATAAGTCTCCATTAGTTTTCTTTAAGCCTAATTTCCAACAACCATTTGATCCTAATGCTACAACATCAATGATGGTCCCAAGTAACACTGTATTGCAAAAGGCGAACAACAGTGTGAATGTTTCGTGCTCACCATCAGAGAATCGGGATCATGCAAAACCGGCCCAGATTGTGCTTTTTGGCAAAACCATAAGGATCGCCCCCGGAAATGAAAATGCTGTGAATAAAATCACTAATAACTTTTCTAATCTTCTACAAGCCCCGCCAAAACAATCCACTGGTGAGAGGCTCGAATCTAATCCCAAGAACCAATGCATAAAAGAAACTTTGGCAGGAGAAACATTGGAGAGTGAACATTCAGGTAGGAATTAG 1794 0.4169 MSEESEEKLIDGNNDVDPQLWRAIAGGMVQIPQVNSKIFYFPQGHAEHAYEPVNFSVDVKVPFFIPCRVAAIHYRADPDTDEVYAKLRLVPLHISEAGFDDGCVGGVDDMSETKNKYQSYTKTLTQSDANNGGGFSCPRYCAETLLPPLDYSGTPPSQYISATDVHGQTWEFKHVYRGTPKRHLLTTNWSDFVTDKLLVSGDSLVFLRAENGDLHIGIRRSTRRNEIGFNPSSKRKPGSEIGIRIGPSYLGLTSSSGEKDNKLQKNDKEKGLKISDKIMGRGKVKAEDVIEAVRLGVNMQPFDVVYYPRVGTPEFFVKTSSIRTALQIRWCCGMRFKMAFETEDSSRISWFMGTITSVQAADPAWPDSLWRLLQVTWDEPELLKNTKRVNPWQVEIVSHMPSIPFSSFLPPSRKKLRLSQYPDYPIGGQFSMPTFPNYIQTPNVPIFHLPKTSPAGMQGARHDPFGVSLSDIHINKSPLVFFKPNFQQPFDPNATTSMMVPSNTVLQKANNSVNVSCSPSENRDHAKPAQIVLFGKTIRIAPGNENAVNKITNNFSNLLQAPPKQSTGERLESNPKNQCIKETLAGETLESEHSGRN 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02983 597 FunFam Auxin response factor 118 222 - -
Vifa5g02983 597 CDD B3_DNA 119 220 IPR003340 GO:0003677
Vifa5g02983 597 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 558 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02983 597 Pfam Auxin response factor 297 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02983 597 Gene3D - 118 222 IPR015300 -
Vifa5g02983 597 Gene3D - 329 402 - -
Vifa5g02983 597 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Vifa5g02983 597 SMART B3_2 120 222 IPR003340 GO:0003677
Vifa5g02983 597 FunFam Auxin response factor 330 402 - -
Vifa5g02983 597 SUPERFAMILY DNA-binding pseudobarrel domain 113 225 IPR015300 -
Vifa5g02983 597 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02983 Vifa-Chr5 984480343 984482229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02983 16 473 B3 DNA Binding Superfamily AT4G30080 52.331 1.69e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02983 B3 6.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02983 - - psat:127130059 1002.66