Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02982 ATGGCAAAATCAATGAAAGCAAAGACAAACGGTTGCAATGGAACTCATTCTAACAAGAAGAAGGATAAGGAGTCAAAGAAGAAGTTGATTGATGGGAACAGAGATGTGGATCCTCAGGTATGGCATGCTGTTGCGGGAGGAATAGTGCGAATACCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGTCGAGCATGCCTGTGAACCTGTCCATTTTCCTGATGACTTCAAAATTCCATCAAAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGCATATTAGCGAAGTTAGTTTGGTTGATGATGATGTTGCTGACATCAATAATATGTCTGAAACTAAGAATAAATATCAATCTTACATAAAAACCTTGACCCAATCTGATGCAAACAATGGTGGTGGATTTTCTTGTCCTAGGTATTATGCTGAAACGCTTTTTCCTCCATTAGACTATTCAGATATGATTCCTTCTCAGGACATTTATCCCACAGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATCGAGGCGCACCAAAGCGGCATCTGTTAACAACTGGGTGGAGTGATTTTGTGACAGATAAGCTACTTAATTCGGGAGATTCACTTGTGTTTGTGAGAGATGAATACAATGATCTTCATATTGGAATTCGAAGGTCTAAAAAACAAAACGACAGTGGTTTTAAATTTTCATTAAAGAGGAAACTTGGTAGTGAAACCGGAAATTGTCTTGGACCATCATACGGTAGACTTACTTCGTCTTTAGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATTGGGAGAGTGAAGGCTGAAGATGTTATTGAAGCAGTAATACTTGGTATCAATATGCAACCGTTTGATGTGGTTTATTATCCACGGGTTGGTACTCCCGAGTTTTTTGTGAAAACTTCTTTAATTAGAACAGCACTTCAGATTAGGTGGTATTCTGGAATGAGGTTCAAGATGGCCATTGAAACAGAAGACTCGTCAAAGATAAATTGGTTAATGGGAACAATTGCTTCTCTTCAGACTGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACTTCTGCAGGTGACATGGGACGAACCTGATTTACTTACAAATACAATGCTGAATATGTGGCAAGTCGAAATTGTATCGGAAATGCCTTGGTTCCCTTTTCACCCTTTGTTGTCATCAAGTAAGAAACCGAGATTGGCTCAACACCCAACTTTCCTCATGAATGGCCAATTATCAATGCCAACTTTTCCAAATGTTGCAATGACTAGTACTGCAGGCATGCAGGGAGGCGAGTATGATCATTTTAGTCACTCTAATTCATGCTATCACCTGGAAAAAATTCCATTAGGTCTCTTTATAGCCCAACAAAGATTTAATCACGATGCCTCAACATCGACGACTGTCCCTAATAGCCCGATGTTGCTAAAGGAGAGCAGCAGTGAGAGTGATTCCAGTGAGAATGTTTCAAGCTTGATATTAATTTCTACACAACCATCAGAGAAACCAGATCATAAGTTGAAAGAGTTTCAGTTTTTTGGCCAAACAATGGATCATGCGAAGCCGAAAGAGTTTAAGTTTTTTGGCCAAACAATGGATCATGGGAAGCCGAAAGAGATTCAGTTTTTTGGCCAAACAATGGATCATGCGAAGCCGAAAGAGTTGGTGCTTTTTGGCCAAACAATAGTTCATGCCAAGCCGAAACAGTTGGTGCTTTTTGGCCAAAATATACAAATTGACTCGAGAAATGAAAATGGCGAGGAGAAAATCACTAACTAA 1848 0.401 MAKSMKAKTNGCNGTHSNKKKDKESKKKLIDGNRDVDPQVWHAVAGGIVRIPEVNSKIFYFPQGHVEHACEPVHFPDDFKIPSKIPCRVAAIHYRADPDTDEVYAKLRLVPLHISEVSLVDDDVADINNMSETKNKYQSYIKTLTQSDANNGGGFSCPRYYAETLFPPLDYSDMIPSQDIYPTDVHGETWRFRHAYRGAPKRHLLTTGWSDFVTDKLLNSGDSLVFVRDEYNDLHIGIRRSKKQNDSGFKFSLKRKLGSETGNCLGPSYGRLTSSLGELRISDKVMGIGRVKAEDVIEAVILGINMQPFDVVYYPRVGTPEFFVKTSLIRTALQIRWYSGMRFKMAIETEDSSKINWLMGTIASLQTADPAWPDSLWRLLQVTWDEPDLLTNTMLNMWQVEIVSEMPWFPFHPLLSSSKKPRLAQHPTFLMNGQLSMPTFPNVAMTSTAGMQGGEYDHFSHSNSCYHLEKIPLGLFIAQQRFNHDASTSTTVPNSPMLLKESSSESDSSENVSSLILISTQPSEKPDHKLKEFQFFGQTMDHAKPKEFKFFGQTMDHGKPKEIQFFGQTMDHAKPKELVLFGQTIVHAKPKQLVLFGQNIQIDSRNENGEEKITN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02982 615 Gene3D - 337 407 - -
Vifa5g02982 615 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Vifa5g02982 615 SMART B3_2 140 242 IPR003340 GO:0003677
Vifa5g02982 615 SUPERFAMILY DNA-binding pseudobarrel domain 136 243 IPR015300 -
Vifa5g02982 615 MobiDBLite consensus disorder prediction 1 31 - -
Vifa5g02982 615 MobiDBLite consensus disorder prediction 15 31 - -
Vifa5g02982 615 CDD B3_DNA 139 240 IPR003340 GO:0003677
Vifa5g02982 615 Pfam Auxin response factor 305 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02982 615 Pfam B3 DNA binding domain 141 241 IPR003340 GO:0003677
Vifa5g02982 615 MobiDBLite consensus disorder prediction 486 513 - -
Vifa5g02982 615 Gene3D - 138 241 IPR015300 -
Vifa5g02982 615 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 576 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02982 615 FunFam Auxin response factor 138 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02982 Vifa-Chr5 984303764 984305713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02982 34 442 B3 DNA Binding Superfamily AT4G30080 51.675 1.01e-130 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02982 B3 3.3e-16 CL0405