Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02981 ATGGCGAAGTCTATGAAACCAAGAACAAACTATTGCAATCAAACTCCTTCTAATAAGAAGAAGGAGAAGGAGTCAAAGAAGAAGTTGATTGATGGAAATAAAGATGTGGAGCCTCAGCTATGGCATGCTATTGCTGGAGGAATGGTTCGAATTCCAGAACTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCGTATGAACCTGTCAATTTTCCTGCTGACTTCAAAATTCCATCACAAATTCCATGTAGAGTTGTAGCTATCCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGCATATTAGCGAAGTTAGTTTGGTTGATGATGATGTTGTTGGCAATGATAATATGTCTGAAACTAAGAATAAATATCAATCTTACACGAAAACCTTGACAAGGTCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAAGTATTGTGCCGAAACGCTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTTCTCAGGACATTTATCCCACAGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATAGGGGTGCACCAAAGCGGCATCTGTTTACAACTGGGTGGAGTGATTTTGTGACCGATAAGCTACTTGTTTCCGGGGATTCACTTGTGTTTGTGAGAGATGAGTACAATGATCTTCATGTTGGAATTCGAAGGTCTAAAAAACGAAACGACTGTGAATTTAAATTTTCATCAAAGAGGAAACTTGGTAGTGAAACTGGAATTTGTCTTGGACCATCATACGATAGACTTACTTCTTCTTTAGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATTGGGAAAGTGAAGGCCGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAACCGTTTGATGTGGTTTATTATCCACGGGTTGGTACTCCCGAGTTTTTTGTGAAAACTTCTTTAATTAGAACAGCACTTCAGATTAGGTGGTATTCTGGAATGAGGTTCAAGATGGCCATTGAAACAGAAGACTCGTCAAAGATAAATTGGTTAATGGGAACAATTGCTTCTCTTCAAGCTGCTGATGCAGCATGGCCTGACTCTCTTTGGAGACTTCTGCAGGTGACATGGGACGAACCTGATTTACTTACAAATACAAAAGTGCTGAATATGTGGCAAGTTGAAATAGTATCGGACATGCTCCCTTTTCACCCTTTGTTGTCATCAAGTAAGAAACTGAGATTGGCTGAACACCCAACTTTCCCCATGAATGGCCAATTATCAATGCCAACTTTTCCAAATGTTGCAATGACTAGTACTGCAGGCATGCAGGGAGGTGGGCATGATCGTTTTAGTGACTCTAATCCATGCTATCACCTAGAAAAAATTCCATTAGGTCTCTTTATAGCCCAACAAAGATTTAATCACGATGCCTCAACATCGACGACTGTCCCTAATAGTCCAACATTGCTAAATGAGAGCAACAGTGAGAATGTTTCAAGCTTAATATCAATTTCTACACAACCATCAGAGAAACCGGATCATGACAAGCCGAAAGAGATTCAGTTTTTTGGCCAAACAATGGATCATGCGAAGCCGAAAGAGTTGGTGCTTTTTGGCCAAACAATAGTTCATGCCAAGCCGAAACAGTTGGTGCTTTTTGGCCAAAATATACAAATTGACTCGAGAAATGAAAATGGCGAGGAGAAAATCACTAATTATTCTTCTGATTCTCTTCTACAAGACTCTTCTAGTGAGAGGCTGGATTGTAATCTAGGGAACCAATGCGCAAAAGATATATGGGCAGGAGAAACAATGGAGATTGAAGATTCAGGTAAGAATAAGAAATGA 1872 0.4006 MAKSMKPRTNYCNQTPSNKKKEKESKKKLIDGNKDVEPQLWHAIAGGMVRIPELNSKIFYFPQGHAEHAYEPVNFPADFKIPSQIPCRVVAIHYRADPDTDEVYAKLRLVPLHISEVSLVDDDVVGNDNMSETKNKYQSYTKTLTRSDANNGGGFSCPKYCAETLFPPLDYSDMLPSQDIYPTDVHGETWRFRHAYRGAPKRHLFTTGWSDFVTDKLLVSGDSLVFVRDEYNDLHVGIRRSKKRNDCEFKFSSKRKLGSETGICLGPSYDRLTSSLGELRISDKVMGIGKVKAEDVIEAVKLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTALQIRWYSGMRFKMAIETEDSSKINWLMGTIASLQAADAAWPDSLWRLLQVTWDEPDLLTNTKVLNMWQVEIVSDMLPFHPLLSSSKKLRLAEHPTFPMNGQLSMPTFPNVAMTSTAGMQGGGHDRFSDSNPCYHLEKIPLGLFIAQQRFNHDASTSTTVPNSPTLLNESNSENVSSLISISTQPSEKPDHDKPKEIQFFGQTMDHAKPKELVLFGQTIVHAKPKQLVLFGQNIQIDSRNENGEEKITNYSSDSLLQDSSSERLDCNLGNQCAKDIWAGETMEIEDSGKNKK 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02981 623 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 591 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02981 623 MobiDBLite consensus disorder prediction 486 516 - -
Vifa5g02981 623 SMART B3_2 140 242 IPR003340 GO:0003677
Vifa5g02981 623 MobiDBLite consensus disorder prediction 1 32 - -
Vifa5g02981 623 SUPERFAMILY DNA-binding pseudobarrel domain 136 242 IPR015300 -
Vifa5g02981 623 Pfam Auxin response factor 304 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02981 623 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Vifa5g02981 623 FunFam Auxin response factor 138 242 - -
Vifa5g02981 623 Pfam B3 DNA binding domain 141 241 IPR003340 GO:0003677
Vifa5g02981 623 Gene3D - 337 408 - -
Vifa5g02981 623 Gene3D - 138 241 IPR015300 -
Vifa5g02981 623 CDD B3_DNA 139 240 IPR003340 GO:0003677
Vifa5g02981 623 MobiDBLite consensus disorder prediction 17 32 - -
Vifa5g02981 623 MobiDBLite consensus disorder prediction 486 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02981 Vifa-Chr5 984237953 984239926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02981 34 456 B3 DNA Binding Superfamily AT4G30080 48.359 1.05e-135 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02981 B3 8.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02981 - - psat:127130067 809.29