Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02980 ATGGAAACATCTACGATAGGTGGTAATAGAGAGTCAGAGAAGATGAAGATAGATGGGAACAAGGATGTGGATCCTCAGCTATGGCATGCTGTTGCTGGAGGAATGGTTCGAATTCCAGAACTTAACTCTAAGATCTTCTACTTCCCTCAAGGCCATGCCGAGCATGCATATGAACCTGTCAACTTTCCTGCTGACATCAACATTCCATCCAAAATTCTATGTAGAGTTGCAGCTGTTCATTATAGGGCTGATCCCGACACAGATGAAGTGTATGCAAAACTAAGGCTCGTTCCTCTGCATCCTAGCGATGTTAATTTTGATGATGATGCTGTTGCTGGCGTCGATGACAATCTGATGCAATCTTATTCAAAAACCTTGACACAATCTGATGCATATAGAGGTGGATTCGCTTGTCCTAAGAATTGTGCAGAAATAATTTTTCCTCCATTAGACTATTCAGATAAGCTTCCTTCTCAGGACATATATCCCGTGGATGTGCATGGCAAAATGTGGAAATTCAGACATATTTATTCGACGAGGAATATATTAACAACTGGGTGGAGTGATTTTGTAACCAACAAACAACTTGATTCGGGGGATTCAGTTGTGTTTGTGAAAGCTGCAAACAGTGATCTTCATATTGGAATTCGAAGGTCTAAAAATGGAAATGGATTGAAAATACGTGATAGGATTATGGATAGGGAAAAAGTGAAGGCTGAAGATGTTATTGAAGCAATACAACTTGGTGTCAATATACAGCCGTTTGATGTGGTTTACTATCCTTGGGTTGGTACTCCCGTGTTTTTTGTGAAAACCTCTTTAATTAGAACAGCACTTCAGATTGGGTGGGGTTGTGGAATGAGGTTTAAGATGGCCTTTGAAACGGAAGACTCGTCAAAGATAAATTGGTTTATGGGAACAATTGCTTCAGTTGAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGACTTCTGCGGGTTACATGGGATGAACCTGTACTTAAAAATATGAAAATGGTGAATCCGTGGCAAGTCAAAATAACTTCAGACATGCCTTCCAAGAAGAAACGGAAATTGTCTCAACGCCCAACTTTCCCTATTGATGGCCAATTATCAATGCCAACTTTTCCAAACAACTTTCAAACACGAGAAACTAGTACTGCATGCATGCATGGAGCCAGGTATGACCATTTTAGTCACCTCAAAAATATTCCAGTATATAACCCAGCATTGCAAATGGAGAGCACCATTGAGAATAATTCGTGCTCGATACCTATTTCTACACAACCGTCAGAGAAACTGGATCATTTGAAGCCGGACCAGATTTTGCTTTTTGGAAAACCAATACAAGACCTGCTGAAGCGTTCCTCTGGTGAGAGGTTGGAATGCAAAAAAGATGCTTTGGCAGAAGAAACAGTGGAGAGTGAAGATTCAGGTAAGAATTAG 1449 0.4092 METSTIGGNRESEKMKIDGNKDVDPQLWHAVAGGMVRIPELNSKIFYFPQGHAEHAYEPVNFPADINIPSKILCRVAAVHYRADPDTDEVYAKLRLVPLHPSDVNFDDDAVAGVDDNLMQSYSKTLTQSDAYRGGFACPKNCAEIIFPPLDYSDKLPSQDIYPVDVHGKMWKFRHIYSTRNILTTGWSDFVTNKQLDSGDSVVFVKAANSDLHIGIRRSKNGNGLKIRDRIMDREKVKAEDVIEAIQLGVNIQPFDVVYYPWVGTPVFFVKTSLIRTALQIGWGCGMRFKMAFETEDSSKINWFMGTIASVEAADPAWPDSLWRLLRVTWDEPVLKNMKMVNPWQVKITSDMPSKKKRKLSQRPTFPIDGQLSMPTFPNNFQTRETSTACMHGARYDHFSHLKNIPVYNPALQMESTIENNSCSIPISTQPSEKLDHLKPDQILLFGKPIQDLLKRSSGERLECKKDALAEETVESEDSGKN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02980 482 Gene3D - 119 219 IPR015300 -
Vifa5g02980 482 ProSiteProfiles B3 DNA-binding domain profile. 165 220 IPR003340 GO:0003677
Vifa5g02980 482 CDD B3_DNA 121 218 IPR003340 GO:0003677
Vifa5g02980 482 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 404 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02980 482 Pfam Auxin response factor 251 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02980 482 Pfam B3 DNA binding domain 124 219 IPR003340 GO:0003677
Vifa5g02980 482 Gene3D - 284 354 - -
Vifa5g02980 482 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Vifa5g02980 482 SMART B3_2 122 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02980 Vifa-Chr5 984220433 984221994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02980 15 407 B3 DNA Binding Superfamily AT4G30080 46.429 1.03e-120 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02980 B3 8.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02980 - - psat:127130059 573.933