Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02979 ATGGGGAGACCTATGAAAGCAGGAACAAACGGTTGCAATGGAACTCCTTCTAATAAGAAGAAGGAGAAGGAGTCAAAGAAGAAGCTGATTGATGGGAACAGAGATGTGGACCCTCAGCTATGGCATGCTATTGCTGGAGGAATGGTTCGAATTCCAGAACTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATGAACCTGTCAATTTTCCTGCTGACATCAAAATTCCATCCCAAATTCCATGTAGAGTTGCAGCTATCCATTATAGGGCTGATCCTGATACAGATGAAGTGTATGCAAAACTCAGGCTTGTTCCTCTGCATATTAGTGAAGTTAGTTATGATGATGACCATGTTGCTGACATCCATAATATGTCTGAAACTAAGAATAAATATCAATCTTACACAAAAACCTTGACACAATCTGATGCTAATAATGGGTGTGGATTCTCTTGTCCTAAGTATTGTGCCGAAACGCTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTTCTCAGGACATTTATCCCACGGATGTGCATGGAGAAACATGGAGATTCAGACATGCTTATCGGGGCATGCCAAAGCGGCATCTGTTTACAACTGGGTGGAGTGACTTTGTGAACGAAAAGCTACTTGTTTCCGGGGATTCACTTGTGTTTGTGAGAGATGAACACAATGATCTTCATGTTGGAATTCGAAGGTCTAAAAAACGAAATGACAGTGAATTTAATTTTTCATCAAAGAGGAAACTTGGTAGTGAAACTGGAATTTGTCTTGGACCATCATACGGTAGACGTACTTCGTCTTTAGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAATTGGAAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAACCGTTTGACGTGGTTTATTATCCACGGGTTGGTACTCCCGAGTTTTTTGTGAAAACTTCTTTAATTAGAACAGCACTTCAGATCAGGTGGTATTCTGGAATGAGGTTCAAGATGGCCATTGAAACAGAAGACTCGTCAAAGATAAATTGGTTAATGGGAACAATTGCTTCTCTTCAGACTGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACTTCTGCAGGTGACATGGGACGAACCTGATTTACTTACAAATACAATGCTGAATATGTGGCAAGTCGAAATTGTATCGGAAATGCCTTGGTTCCCTTTTCACCCTTTGTTGTCATCAAGTAAGAAACCGAGATTGGCTCAACACCCAACTTTCCTCATGAATGGCCAATTATCAATGCCAACTTTTCCAAATGTTGCAATGACTAGTACTGCGGGCATGCAGGGAGGCGGGCATGATCATTTTAATCACTCTAATTCATGCTATCACCTAGAAAAAATTCCATTAGGTCTCTTTATAGCCCAACAAAGATTTAATCACGATGCCTCAACATCGACGACTGTCCCTAATAGCCCAACGGTGCTAAAGGAGAGCAGTGGTGAGAATGTTTCAGGCTTCATATCAATTTCTACACAACCATCAGAGAAACTAGATCATGTGATGCCGAAAGAGGTCATGTTTTTTGGCCAGACAATGGATCATGCGAAGCCGAAACAGTTGGTGCTTTTTGGCCAAACAATCGTTCATTCGAAGCCGAAACAGTTGGTGCTTTTTGGCCAAAAAATACACATTGACTGGGGAAATGAAAATGGTGAGGGGAAAATCACTAATTATTCTTCTCATTCTCCTCAACAAGACTCCTCTAATGAGAAGTTGGAATGTAATCTAGAGAACCAATGCAAAAAAGATGCTTTGGAAGGAGAAACGATGGAGATTGAAGACTCAGGGGTAACGTTGGGACAAAGCAATGTTGTATGTGTTTTTTGCAAACATGCTGTTGAATCAGACTGCCACATGCTTCCTGTGTCTGCATTGAGCGTTTGGCTTTGCTCGCGGGTCATCATGATGCTCATTAAGCTTTGCCATGAGATTTCCCCCGAGGATGTTCTCGTGCAAGGATGCGAGAGTTTGTCGTTCCTTCCCGACAAGGGGGCTTGA 2070 0.4198 MGRPMKAGTNGCNGTPSNKKKEKESKKKLIDGNRDVDPQLWHAIAGGMVRIPELNSKIFYFPQGHAEHAYEPVNFPADIKIPSQIPCRVAAIHYRADPDTDEVYAKLRLVPLHISEVSYDDDHVADIHNMSETKNKYQSYTKTLTQSDANNGCGFSCPKYCAETLFPPLDYSDMLPSQDIYPTDVHGETWRFRHAYRGMPKRHLFTTGWSDFVNEKLLVSGDSLVFVRDEHNDLHVGIRRSKKRNDSEFNFSSKRKLGSETGICLGPSYGRRTSSLGELRISDKVMGIGKVKAEDVIEAVKLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTALQIRWYSGMRFKMAIETEDSSKINWLMGTIASLQTADPAWPDSLWRLLQVTWDEPDLLTNTMLNMWQVEIVSEMPWFPFHPLLSSSKKPRLAQHPTFLMNGQLSMPTFPNVAMTSTAGMQGGGHDHFNHSNSCYHLEKIPLGLFIAQQRFNHDASTSTTVPNSPTVLKESSGENVSGFISISTQPSEKLDHVMPKEVMFFGQTMDHAKPKQLVLFGQTIVHSKPKQLVLFGQKIHIDWGNENGEGKITNYSSHSPQQDSSNEKLECNLENQCKKDALEGETMEIEDSGVTLGQSNVVCVFCKHAVESDCHMLPVSALSVWLCSRVIMMLIKLCHEISPEDVLVQGCESLSFLPDKGA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02979 689 Pfam Auxin response factor 304 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02979 689 SMART B3_2 140 242 IPR003340 GO:0003677
Vifa5g02979 689 Pfam B3 DNA binding domain 141 241 IPR003340 GO:0003677
Vifa5g02979 689 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Vifa5g02979 689 CDD B3_DNA 139 240 IPR003340 GO:0003677
Vifa5g02979 689 Gene3D - 337 407 - -
Vifa5g02979 689 SUPERFAMILY DNA-binding pseudobarrel domain 136 243 IPR015300 -
Vifa5g02979 689 MobiDBLite consensus disorder prediction 17 32 - -
Vifa5g02979 689 MobiDBLite consensus disorder prediction 1 32 - -
Vifa5g02979 689 Gene3D - 138 241 IPR015300 -
Vifa5g02979 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 595 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02979 689 FunFam Auxin response factor 138 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02979 Vifa-Chr5 984166609 984170458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02979 34 467 B3 DNA Binding Superfamily AT4G30080 49.345 6.87e-136 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02979 B3 3.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02979 - - psat:127130067 806.979