Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02978 ATGGTGACATCTACGAAAGGTGACAATGGAGAGTCAAAGAAAAAGAAGATAGATGGGAACAAGGATGTGGATCCTCAGCTATGGCATGCTGTTGCTGGAACAACTGTGCAAATTCCACAAGTTAACTCTAAGATCTTCTACTTCCCTCAGGGTCATGCCGAGCATGCATATGAACCTGTCAACTTTCCCGCTGACATCAACATTCCATCCAAAATTCCATGTAGAGTTGCAGCTGTTCATTATAGGGCTGATCCTCGCACGGATTTAGTGTATGCAAAACTAAGGCTCGTTCCTCTGCAAATTAGCCAAGTTAGTATTGATGAAGACAATGTTGCTGGCGTCGATGACATGTCTGTAACTAAGAATCAATATCAATCTTATACGAAAACCTTGACAGAATCTGATATAAACAAGAGTGGTGGATTCTCTTGTCCTAAGAAGTGTGCAGAAACAATGTTTCCTCCATTAGACTATTCAGATCAGCTTCCTTCTCAGGACATATATCTCATGGATGTGCATGGCGAAATGTGGAAATTCAGACATGTTTATGCGACGCGGAATATATTAACAACTGGGTGGAGTGATTTTGTAACCAACAAACAACTTGAATTGGGGGATACACTTGTGTTTGTGAAAGCTGCAAACAGTGATCTTCATATTGGAATTCGAAGGTCTAAAAAACGAAATGACTGTAGATTTAACTTTCCATCAAAGAGGAAACCTGAAACTGGAACTCTTCTTCAACCACCAGACGGAGGACTTAGCTCGTCTTTAGGGAATGAACGGAGAATAGGCGATAAGGTGATAGGAATTGGAAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAACCGTTTGATGTGGTTTACTATCCACGGGTTGGTACTCCGGAGTTTTTTGTGAAAACCTCTTTAATTAGAACAGCACTTCAGATTGGGTGGGATTGTGGAATGAGGTTCCAGATGGCCATTGAAACGGACTCGTCAAAGATAAATTGGTTAATGGGAACAATTGCTTCAGTTGAGGCTGCTGATGCAGCATGGCCTGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGATAATCCTGATTTAGTTACAAATACGAAGAGGCTGAATCCCTGGCAAGTTGAAACATTACGGTACATGTCATCAAGTAAGGAACTGGGATTGCCTCAACTCCCAACTTTTCCCATGGATGGCCAATTTTCAATGCCATATTTACCAAACTACTTTCAAACACCAAAGGGTCCAATTATGTATTTACCAGAAACTAGTATGCCTTATTTCCAACAACCATTTAATCGCGATGATGCTACAACATTGACAACAGTCTCTAATAACCCGGCCTGCCGAAAGGTTCCTCTGGTGAGAGGCTGGAGTGTAATCCCGAGAATCAATGCAAAAAAAGATGCTTCGGAAGGAGAAACAGTGGAGATTGAAGATTCAGTGAGTTCATCAAAAGAGGCAGCGTGA 1494 0.4163 MVTSTKGDNGESKKKKIDGNKDVDPQLWHAVAGTTVQIPQVNSKIFYFPQGHAEHAYEPVNFPADINIPSKIPCRVAAVHYRADPRTDLVYAKLRLVPLQISQVSIDEDNVAGVDDMSVTKNQYQSYTKTLTESDINKSGGFSCPKKCAETMFPPLDYSDQLPSQDIYLMDVHGEMWKFRHVYATRNILTTGWSDFVTNKQLELGDTLVFVKAANSDLHIGIRRSKKRNDCRFNFPSKRKPETGTLLQPPDGGLSSSLGNERRIGDKVIGIGKVKAEDVIEAVKLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTALQIGWDCGMRFQMAIETDSSKINWLMGTIASVEAADAAWPDSLWRLLQVTWDNPDLVTNTKRLNPWQVETLRYMSSSKELGLPQLPTFPMDGQFSMPYLPNYFQTPKGPIMYLPETSMPYFQQPFNRDDATTLTTVSNNPACRKVPLVRGWSVIPRINAKKDASEGETVEIEDSVSSSKEAA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02978 497 MobiDBLite consensus disorder prediction 1 21 - -
Vifa5g02978 497 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 398 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02978 497 SUPERFAMILY DNA-binding pseudobarrel domain 122 226 IPR015300 -
Vifa5g02978 497 CDD B3_DNA 126 224 IPR003340 GO:0003677
Vifa5g02978 497 ProSiteProfiles B3 DNA-binding domain profile. 127 226 IPR003340 GO:0003677
Vifa5g02978 497 SMART B3_2 127 226 IPR003340 GO:0003677
Vifa5g02978 497 Pfam Auxin response factor 287 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02978 497 Pfam B3 DNA binding domain 128 225 IPR003340 GO:0003677
Vifa5g02978 497 Gene3D - 319 393 - -
Vifa5g02978 497 Gene3D - 125 225 IPR015300 -
Vifa5g02978 497 MobiDBLite consensus disorder prediction 237 257 - -
Vifa5g02978 497 MobiDBLite consensus disorder prediction 475 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02978 Vifa-Chr5 983623444 983625337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02978 21 403 B3 DNA Binding Superfamily AT4G30080 46.929 8.18e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02978 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02978 - - psat:127130059 592.808