Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02976 ATGGCAAAGTATCCTGAAACCGAACCTCAAGGTGGTTTACCAAACAAAGACTACCAAGATCCACCACCAGTTCCACTCTTCGACACCGCCGAACTCGGCCAGTGGTCCTTCTACAGAGCCCTCATAGCTGAATTTATCGCCACCCTCCTCTTCCTCTACGTCACAGTTCTAACCGTCATCGGCTACAAATCCCAAACCGATCCAGCTCATAACGGTACCGACTGTGACGGCGTCGGCCTCCTCGGTATCGCTTGGGCCTTTGGCGGCACGATCTTTGTCCTAGTCTATTGCACCGCCGGAATATCAGGAGGACATATAAATCCGGCGGTGACGTTTGGGTTGTTTCTGGCGAGGAAGGTATCGTTGATCAGAGCAATATTATACATGGTGGCTCAATCTTTAGGAGCAATATGTGGTGTTGGACTAGTAAAAGTTTTTCAGAAGAGTTACTATAATAGATACAAAGGTGGTGCAAACATGTTAAACGATGGTTACAGTAAAGGAACTGGGTTAGGTGCTGAAATAATTGGAACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACCGATCCCAAGAGAAATGCTAGAGACTCTCATGTTCCCGTTTTGGCCCCACTTCCAATTGGTTTTGCTGTGTTTATGGTTCATCTTGCTACAATTCCTATCACTGGAACTGGTATCAACCCTGCTAGAAGCTTTGGAGCTGCTGTTATTTACAACAATGAGAAAGCTTGGGATGATCAATGGATCTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATCTACCACCAGTTTGTGTTAAGAGCCCAAGCAGCTAAGGCTTTGGGTTCTTTCAGAAGCTCTTCAAACCTGTAA 864 0.463 MAKYPETEPQGGLPNKDYQDPPPVPLFDTAELGQWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAHNGTDCDGVGLLGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQSLGAICGVGLVKVFQKSYYNRYKGGANMLNDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFRSSSNL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02976 287 MobiDBLite consensus disorder prediction 1 21 - -
Vifa5g02976 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vifa5g02976 287 SUPERFAMILY Aquaporin-like 32 271 IPR023271 -
Vifa5g02976 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Vifa5g02976 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Vifa5g02976 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 281 IPR034294 -
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g02976 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02976 Vifa-Chr5 982299600 982300873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02976 1 287 Major Intrinsic Protein MIP AT2G37170 80.139 4.98e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02976 K09872 - mof:131165648 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02976 5 982299600 982300873 Vifa5g02976 5 982299600 982300873 ECH
Vifa5g02976 5 982299600 982300873 Vifa1g01380 1 224602870 224604545 ECH