Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02972 ATGGCGACATCTACGAAAGATGACAATAGAGAGTCAAAGAAAAAGAAGATAGAAGATGGGAACACGGATGTGGATCCTCGGCTATGGCATGCTGTTGCTGGAACAACTGTGCAGATTCCACAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATGAACCTGTCCACTTTCCTGATGACATCAACATTCCATACAAAATTCCATGTAGAGTTGCAGCTATTCATTATATGGTTGATCCCGACACAGATGAAGTGCATGCAAAACTCAGGCTTGTTCCTCTGCATCCTAGCGATGTTAGTATTGATGATGACGCTGTTGCTGGTGTCGATGACATGTCTGTAACTAAGAATCAATATCAATCTTATACGAAAACCTTGTCAGAATCTGATATAAACAAGAGTGGTGGATTCTCTTGTCCTAAGAAGTGTGCAGAAACATTTTTTCCTCCATTAGACTATTCAGGTAAACCTACTTCTCAGAAGATTTATCTAACAGATGTTCAAGGCAAAACGTGGGAAATAAAACATTTTTATAGGGGCTCGAAGCGGCATGTGTTATCAACTGGGTGGGCTGATTTTGTAACCAAGAAGCGACTTGTTTCGGGGGATTCACTTGTGTTTACGAGAGCTGAAAACGGTGATCTTCATATTGGAATTCGAAGGTGTAAAAGACAAAAAGACTTTGGATTTAACCCTTCATCTGGAAATGAATTGAGAATAAGTGATAAGGTGATGGGATTTGGAAACGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTCAGTGCCAATATGCAACCGTTTGATGTGGTTTACTATCCTCATGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTTAGTTAGAACAGCACTTGAGACTAGGTGGGATTGTGGAATGAGGTTCAAGATGGCCTTTGAAACGGAAGACTCGTCAAAGATAAATTGGTTTATCGGAACAATTGCTTCTGTTCAAGCTGCTGATCCAGCATGGCCAGACTCTCTTTGGAGACTTCTGCAGGTTACATGGGGTGAACCTAATTTGCTGACAAATACCAACAGGCTGAATCCCTGGCAAGTTGATATATCACAGTATGTGCCACCTACGATCCCTTTTTCCCCTATCTTGCCTGAACTGGGATTGCCTGAACTCCCAACTGTCATGGATGGCCAATTTTCAGTGCCATCTTTTCCAAACAACTCTCAAACACCAAACGTTCCAATTTTGTGTAGTCCTACAGGCATGCAGGGAGACATGAATGATAATTGTAGTCCCTTGAAGCCTTATTTCCAACAACCATTTAATCACGATGATGCTACAACATTGACAACAATCTCTAATAACCCGGTATTGCAAACGCCAAGCGCCATTGAGAATGTTTCGTGCTCTACACAACCATCAGAGACACTGGATTATGCGAAGCTGGAAGAGTTTCTGGATTTTGACCAAACAATAGAAATTGACTCGGGAAATGAAAATGTTGAGAAAAAAATCGCTAATTATTCTTCTGATCTTCTACAAGACCTGTCAAAAGGTTCCTCTGGTGAGAGGCTGGAGTGTAATCCCGAGAACCAATGCAAAAAAGATGCTTCGGAAGGTGAAACAGTGGAGATTGAAGATTCAGGTAATATTTTTGATGCTGTTTCAGCGAGTTCATCAAAAGAGGCAGTGTGA 1692 0.4137 MATSTKDDNRESKKKKIEDGNTDVDPRLWHAVAGTTVQIPQVNSKIFYFPQGHAEHAYEPVHFPDDINIPYKIPCRVAAIHYMVDPDTDEVHAKLRLVPLHPSDVSIDDDAVAGVDDMSVTKNQYQSYTKTLSESDINKSGGFSCPKKCAETFFPPLDYSGKPTSQKIYLTDVQGKTWEIKHFYRGSKRHVLSTGWADFVTKKRLVSGDSLVFTRAENGDLHIGIRRCKRQKDFGFNPSSGNELRISDKVMGFGNVKAEDVIEAVKLSANMQPFDVVYYPHVGTPEFFVKTSLVRTALETRWDCGMRFKMAFETEDSSKINWFIGTIASVQAADPAWPDSLWRLLQVTWGEPNLLTNTNRLNPWQVDISQYVPPTIPFSPILPELGLPELPTVMDGQFSVPSFPNNSQTPNVPILCSPTGMQGDMNDNCSPLKPYFQQPFNHDDATTLTTISNNPVLQTPSAIENVSCSTQPSETLDYAKLEEFLDFDQTIEIDSGNENVEKKIANYSSDLLQDLSKGSSGERLECNPENQCKKDASEGETVEIEDSGNIFDAVSASSSKEAV 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02972 563 ProSiteProfiles B3 DNA-binding domain profile. 128 229 IPR003340 GO:0003677
Vifa5g02972 563 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 470 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa5g02972 563 Pfam Auxin response factor 264 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02972 563 SMART B3_2 128 229 IPR003340 GO:0003677
Vifa5g02972 563 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g02972 563 Gene3D - 302 373 - -
Vifa5g02972 563 CDD B3_DNA 127 227 IPR003340 GO:0003677
Vifa5g02972 563 MobiDBLite consensus disorder prediction 527 541 - -
Vifa5g02972 563 SUPERFAMILY DNA-binding pseudobarrel domain 123 231 IPR015300 -
Vifa5g02972 563 Gene3D - 126 228 IPR015300 -
Vifa5g02972 563 MobiDBLite consensus disorder prediction 518 563 - -
Vifa5g02972 563 Pfam B3 DNA binding domain 129 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02972 Vifa-Chr5 979512028 979513815 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02972 24 423 B3 DNA Binding Superfamily AT4G30080 47.586 1.40e-124 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02972 B3 2.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02972 - - psat:127130059 642.114