Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02967 ATGGCGACATCTACGGAAGATGACAATAGGGAGTCAAAGAAAAAGAAGATAGATGGGAACAAGGATGTGGATCCTCAGCTATGGCATGCTGTTGCTGGAATAACTGTGCAAATTCCAGAACTTAACTCTAACATCTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATATGAACCTGTCAATTTTCCTGCTGACATCAAAATTCCATCCGAAATTCCATGTAGAGTTGCAGCTATCCATTACAGAGCTGATCTTGACACAGATGAGGTGTATGCAAAACTCAGGCTTGTTCCGCTGCATATCAGCGAAGTTAGTTTTGATGACGATGATGTTACTCGCATTGATGACATGTCTGAAACTAAGAATAAATATCAGTTTTACACGAAAACCTTGACACAATCAGATATAAATGGTGGTGGACTCTCTTGTCCTAGGTATTGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGGTACCCCTCCTTCTCAAAAGATTTATCCAACGGATTTCCATGGCGAAACATGGGAATTCAAACATGTTTATAGGGGCATGCCGAAGCGGCATCTGTTATCAACTGGGTGGAGAGTTTTTGTAACTAACAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGCGAGAGCTGAAAACAGTGATCTTCATATTGGAATTCAAAGGTCTAAAAGACTAAACGACTTTGGATTTAACCCTTCACCAAAAAGCAAACCTGGTAATGAAATTGGAATTCGTCTTGTACCACCACATGGAGAACTTAAGTCGTCTTCCGGAGAGAAAGATGATAAACCTCAAAAAAATGAATTGAGAATAAGTGATAAGGTGATGGGAATTGGAAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTTAATTAGAACAGTACTTCAGATTAGGTGGTATTCTGGAATGAGGTTCAAGATGGCCTTTGAATCTGAAGACTCGTCAAAGATAAATTGGTTTATGGGAACAATTGCTTCTCTTCATACTGCTGATCCAGCATGGCCCAACTCTCTTTGGAGACTTCTCCAGGTTACATGGGATAAACCTGATTTACTTAAAAATACGAAAAGGGTGAATCCGTGGCAAGTGGAAATACCTTTGAACACGCCTTCAATCCCTTTTTCCTGTTTCTTGTCACCATCAAGGAAGAAACTGAGATTGCTTGAGTATCAAGCTTTCCCCACTGATGACCAATTTTCAATGCCAACTTTTCCAAACTACTTTCAAACTCCAAATATTCCAATTCTTCATTTACCAGAAACTAATCCTGCTGGTATGCAGGGAGCCGGGCGTGATCCTTTCTGTCTCTCTTTATCAGACTTTCACATCAATAAGTCTCCATTAGGTCTCTTTAAGCCTAATTTACAACAACCATTTGATCATAATGCTACAACATTGATGACGGTCCGAAGTAACGCTGTGTTGCAAAAGGCGAACGACAGTGAGAATGTTCCGTGCTCACCATCAGAGAAACAGGATCATGCAAAGCCGGCCCAGATTGTGCTTTTTGGCCAAACCATAAGGGTTGACGCAGGAAATGAAAATGCTGTGAATAAAATCACTAATAATTTTTCTAATCTTCTACAAGACCCACCAAAACAATCCTCTGGTGAGAGGCTCGAATGTGATCCCGAGAACCAATGCATAAAAGAAACTTTGGCAGGAGAAACATCGGAGACTGAACATTCAGATAGAACTTAG 1800 0.4078 MATSTEDDNRESKKKKIDGNKDVDPQLWHAVAGITVQIPELNSNIFYFPQGHAEHAYEPVNFPADIKIPSEIPCRVAAIHYRADLDTDEVYAKLRLVPLHISEVSFDDDDVTRIDDMSETKNKYQFYTKTLTQSDINGGGLSCPRYCAETLFPPLDYSGTPPSQKIYPTDFHGETWEFKHVYRGMPKRHLLSTGWRVFVTNKLLVSGDSLVFARAENSDLHIGIQRSKRLNDFGFNPSPKSKPGNEIGIRLVPPHGELKSSSGEKDDKPQKNELRISDKVMGIGKVKAEDVIEAVKLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTVLQIRWYSGMRFKMAFESEDSSKINWFMGTIASLHTADPAWPNSLWRLLQVTWDKPDLLKNTKRVNPWQVEIPLNTPSIPFSCFLSPSRKKLRLLEYQAFPTDDQFSMPTFPNYFQTPNIPILHLPETNPAGMQGAGRDPFCLSLSDFHINKSPLGLFKPNLQQPFDHNATTLMTVRSNAVLQKANDSENVPCSPSEKQDHAKPAQIVLFGQTIRVDAGNENAVNKITNNFSNLLQDPPKQSSGERLECDPENQCIKETLAGETSETEHSDRT 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02967 599 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vifa5g02967 599 MobiDBLite consensus disorder prediction 233 272 - -
Vifa5g02967 599 Pfam Auxin response factor 299 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa5g02967 599 MobiDBLite consensus disorder prediction 1 20 - -
Vifa5g02967 599 CDD B3_DNA 126 224 IPR003340 GO:0003677
Vifa5g02967 599 Gene3D - 332 402 - -
Vifa5g02967 599 SMART B3_2 127 228 IPR003340 GO:0003677
Vifa5g02967 599 FunFam Auxin response factor 331 403 - -
Vifa5g02967 599 Gene3D - 125 227 IPR015300 -
Vifa5g02967 599 SUPERFAMILY DNA-binding pseudobarrel domain 122 229 IPR015300 -
Vifa5g02967 599 Pfam B3 DNA binding domain 128 226 IPR003340 GO:0003677
Vifa5g02967 599 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 554 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02967 Vifa-Chr5 979323896 979325808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02967 21 475 B3 DNA Binding Superfamily AT4G30080 49.247 1.09e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa5g02967 B3 2.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02967 - - psat:127130059 918.687