Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02964 ATGATTAATTTTATGGGATTGTTCCACACATTTGTTTTGGTTTGCCAATTCATCATTCTTCAACCCTTTGTTTCTGCTTCAGGAAATGCTGCTGATTTGTTTGAGAAAGCATCCCAAAGTATAAAAGGGAGACATTATACTGAGGCACTCAATGATCTAAATTCTGCAATTGAAGCAGATCCAAACCTTTCAGACGCATACCATTACCGTGCTACAGTTCTTCGCCAGTTATGCAGATATGAGCAATCTGAAAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCCGGACATTCAGCTGCAGAAAAGGAGCTCTCTCAGCTATTGCAAGCTCAAAGTGCGTTAGAAACCGCTCAGTCCCTCTACGAGTCAGGAAACTTCACAAAATCTTTGGAATACATTGAGAAAGTTGTTCTTGTTTTCTCTCCAGCATGCACTAAGGCTAAGCTTCTTAAGGCGAGGTTGTTGATAGCTGATAAAGACTATGATGGTGCCATTGCCGAGTCTGGTTTTCTTCTCAAGGAAGATGAAAACAATTTGGAGGCATTGTTGTTACGTGGTCGTGGATATTACTATTTAGCTGATCATGATGTTGCCACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCCGAGCATAGCGAACTGAAAAAAGCATACTTTGGGTTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGCAAGCTACGGGTGGCAGTAGAGGAATTCAAGAGTGCACTTGCTGTTGACCCTGACCATCGTGCACATAATGTAAATCTTCACCTTGGCTTATGTAAAGTGCTAGTAAGACTTGGCAGAGGAAAAGACGCCTTGAACAGTTGTAGTGAAGCTCTTAATATCAATGAGGAGCTTATTGACGCTCTTGTTCAGAGAGGGGAAGCTAAACTCTTGACGGAGGACTGGGAGGGAGCTGTGGAAGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGCATTAATGAGGGCTGAGAAAGCTTTAAAGATAAGCAAACGCAAGGATTACTACAAAATTTTGGGAATTTCAAAACATGCTTCTGCCGCTGACATAAAACGGGCATACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTCGACAATAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCCGCTGCATACGAGGTTCTAAGTGATGAAGACAAGCGCACAAGATACGACAGAGGGGAGGACCTTGAAGAATCAGGAATGGGAGGCGGCGGTGGTGGCGGTTTCAACCCCTTCGGTGGTGGTGGACAGCAATTTCACTTTACGTTTGACGGCGGCTTCCCTGGTGGAGGATTTCCCGGCGGCGGCGGTGGTTATGAATTTCATTTTTGA 1401 0.4354 MINFMGLFHTFVLVCQFIILQPFVSASGNAADLFEKASQSIKGRHYTEALNDLNSAIEADPNLSDAYHYRATVLRQLCRYEQSERSYKKFLELKPGHSAAEKELSQLLQAQSALETAQSLYESGNFTKSLEYIEKVVLVFSPACTKAKLLKARLLIADKDYDGAIAESGFLLKEDENNLEALLLRGRGYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPDHRAHNVNLHLGLCKVLVRLGRGKDALNSCSEALNINEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKISKRKDYYKILGISKHASAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02964 466 Gene3D Tetratricopeptide repeat domain 26 348 IPR011990 GO:0005515
Vifa5g02964 466 ProSiteProfiles dnaJ domain profile. 351 417 IPR001623 -
Vifa5g02964 466 ProSitePatterns Nt-dnaJ domain signature. 394 413 IPR018253 -
Vifa5g02964 466 Coils Coil 387 407 - -
Vifa5g02964 466 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 8 466 IPR044620 -
Vifa5g02964 466 Gene3D DnaJ domain 349 457 IPR036869 -
Vifa5g02964 466 Pfam Tetratricopeptide repeat 116 166 - -
Vifa5g02964 466 SUPERFAMILY TPR-like 44 346 IPR011990 GO:0005515
Vifa5g02964 466 SUPERFAMILY Chaperone J-domain 345 453 IPR036869 -
Vifa5g02964 466 SMART tpr_5 64 97 IPR019734 GO:0005515
Vifa5g02964 466 SMART tpr_5 110 143 IPR019734 GO:0005515
Vifa5g02964 466 SMART tpr_5 30 63 IPR019734 GO:0005515
Vifa5g02964 466 SMART tpr_5 179 212 IPR019734 GO:0005515
Vifa5g02964 466 SMART tpr_5 263 296 IPR019734 GO:0005515
Vifa5g02964 466 SMART tpr_5 297 330 IPR019734 GO:0005515
Vifa5g02964 466 SMART dnaj_3 350 409 IPR001623 -
Vifa5g02964 466 Pfam DnaJ domain 351 414 IPR001623 -
Vifa5g02964 466 ProSiteProfiles TPR repeat profile. 64 97 IPR019734 GO:0005515
Vifa5g02964 466 PRINTS DnaJ domain signature 389 409 IPR001623 -
Vifa5g02964 466 PRINTS DnaJ domain signature 353 371 IPR001623 -
Vifa5g02964 466 PRINTS DnaJ domain signature 371 386 IPR001623 -
Vifa5g02964 466 PRINTS DnaJ domain signature 409 428 IPR001623 -
Vifa5g02964 466 FunFam DnaJ domain containing protein 22 348 - -
Vifa5g02964 466 ProSiteProfiles TPR repeat profile. 179 212 IPR019734 GO:0005515
Vifa5g02964 466 Pfam Tetratricopeptide repeat 239 304 - -
Vifa5g02964 466 CDD DnaJ 351 406 IPR001623 -
Vifa5g02964 466 FunFam DnaJ subfamily C member 7 349 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02964 Vifa-Chr5 978348296 978352963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02964 347 414 C2H2 Transcription Factor Family AT1G74250 45.833 5.97e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02964 K09523 - gmx:100804685 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02964 5 978348296 978352963 Vifa5g02964 5 978348296 978352963 ECH