Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02962 ATGAATATTCTCAGTGACCCCTTTTCACTCTTCTCTTCCCATGGAGCTTTTGAAAACATTCAAAATACAAATGCAAACCCTAACCCTAATCCATTACCACAAGCCAACAAGAAGAAAAGAAACCTACCAGGAACACCAGATCCAGATGCAGAAGTGATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGTTTCCAAAGGGATCAGAATCTTCAGCTACATAGAAGAGGTCACAATCTACCATGGAAGCTAAAGCAAAGGTCCAGTAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACGTGCGTCCACCACGACGCGGCTCGGGCGCTAGGCGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAGAAGAAATGGAAGTGTGACAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATGCCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGTTTTATTACACATAGAGCTTTCTGTGATGCTTTAGCAGAAGAGAGTGAAAGACATTCTTCACCACTCACTCCTACAACTCTAAATTTCAAGAATGAAGACTCAAATTTGATGAGCACACAGTCACAAACTAGTTTGTCACATGGATTCATATCACGTCAAAATCTAGGTGGTTTTTCACATGAAGGGTTTCATGATCAGCAAAAGCCAAGTTTGTCACTGTGGTTAAACCATGAAAATCAACAGAATATTAATCATCATCCATATGATCATGTCTCATCTGGTTTTTGTGATATCATGCAAATGGCACAAACTAGTATTACTCCAATGTCAGCTACTGCACTTCTACAGAAAGCAGCTCAAATAGGTTCAACAAGAAGCAGTACTACTAATAATAATCCATCTATTTTCAGTGGAAGCTTTGGTGTAACGAGTTCATCTAATTCTACACAAAACCATGATGAGATTAATAACATGGTGATTAATAACCAGAATATGAAGCAGCATGGGAATTTCAATCCAAGTACTACCAGCAGTGCAATGGTTGGTAATAATTCTAGTGGATTTAGAGATTTTCTTGGAGTGAGTAGTAATCATCCATTTCTACCTCAAGAGTTTGCAAAGTTTGCTTCAACAATAACTTCATCGATGATGAGTTTGAATAACTTCAATGAAGGTTGCATCAATGAGAATTAG 1239 0.3898 MNILSDPFSLFSSHGAFENIQNTNANPNPNPLPQANKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESERHSSPLTPTTLNFKNEDSNLMSTQSQTSLSHGFISRQNLGGFSHEGFHDQQKPSLSLWLNHENQQNINHHPYDHVSSGFCDIMQMAQTSITPMSATALLQKAAQIGSTRSSTTNNNPSIFSGSFGVTSSSNSTQNHDEINNMVINNQNMKQHGNFNPSTTSSAMVGNNSSGFRDFLGVSSNHPFLPQEFAKFASTITSSMMSLNNFNEGCINEN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02962 412 FunFam protein indeterminate-domain 12-like 45 113 - -
Vifa5g02962 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vifa5g02962 412 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vifa5g02962 412 MobiDBLite consensus disorder prediction 19 35 - -
Vifa5g02962 412 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Vifa5g02962 412 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Vifa5g02962 412 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Vifa5g02962 412 SMART c2h2final6 107 137 IPR013087 -
Vifa5g02962 412 SMART c2h2final6 142 162 IPR013087 -
Vifa5g02962 412 SMART c2h2final6 66 88 IPR013087 -
Vifa5g02962 412 Gene3D Classic Zinc Finger 120 200 - -
Vifa5g02962 412 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 388 IPR031140 -
Vifa5g02962 412 MobiDBLite consensus disorder prediction 19 48 - -
Vifa5g02962 412 Gene3D Classic Zinc Finger 44 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02962 Vifa-Chr5 978012958 978014469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02962 288 391 IDZ Gene Family AT5G03150 38.971 1.11e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g02962 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02962 K25870 - tpra:123892932 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02962 5 978012958 978014469 Vifa5g02962 5 978012958 978014469 ECH
Vifa5g02962 5 978012958 978014469 Vifa3g01108 3 289816691 289818666 PCT