Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02961 ATGGACAAAAATCCTCATTCAGAAATTCAACTTCCTCCAGGATTTAGATTCCATCCTTCTGATGAAGAGCTTCTAGTTCACTATCTAAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTACAATCCATGGGAGCTTCCAAGTAAGGCTTTGTTTGGTGAAGAAGAATGGTATTTCTTTACTCCAAGGGAGAGAAAATATCCGAAAGGGTTGAGGCCTAATAGAGCAGCTGGTGCTGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTTACTTCATGTGGTTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAGGGACGTCCACCGAAAGGATCTAAAACTGAGTGGATCATGCATGAATATAGGTTGCATGATTCAGTGATCTCAAATTCCAAGCATAATAGTTCTATGCGACTGGATGAGTGGGTGTTATGCCGAGTTCGACAAAAAACCGGAAGCCCGAGAAGGGGTTTGGAAGATTCAAATGAACTTTGTTATTATGAACCAACAGGTCAATTTCATCAAATGAATGAGGATTCTAATCCTGAAGCAGTCAAAAACTATGTGCAGAATGAATATCCAATGTTACCGTATATTCTGGCTTCTAAGAGAGTTCTTCCCAATACCATTGGTATGGCATCAGACAATGTAAAACCACATGCTTCATTTTATGAAGAAAAGAACTTAAACATGATAGGAGCAGAGTTCTTATCATATGCAACTGAGGGATTGTTTAATAATCCTCTCAAGAGAAAAGCCGTCGAAAATAATAGCGAGACTGACTTTTATGCTGTCCTCAATCAAAGCCTAAGCAGAGAAGTTGAAAAAGATTTAAGCAAAGGGTACAATTTCTGCAACTTTGATCAATGGAGTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGTCTTCACTGGATATACCTAA 972 0.3827 MDKNPHSEIQLPPGFRFHPSDEELLVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEEEWYFFTPRERKYPKGLRPNRAAGAGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSVISNSKHNSSMRLDEWVLCRVRQKTGSPRRGLEDSNELCYYEPTGQFHQMNEDSNPEAVKNYVQNEYPMLPYILASKRVLPNTIGMASDNVKPHASFYEEKNLNMIGAEFLSYATEGLFNNPLKRKAVENNSETDFYAVLNQSLSREVEKDLSKGYNFCNFDQWSSIIQPQELNSLVFTGYT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02961 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 239 - -
Vifa5g02961 323 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Vifa5g02961 323 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Vifa5g02961 323 FunFam NAC domain-containing protein 72-like 20 170 - -
Vifa5g02961 323 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Vifa5g02961 323 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02961 Vifa-Chr5 977326688 977327973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02961 7 170 NAC Transcription Factor Family AT1G69490 67.683 3.70e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g02961 NAM 2.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02961 - - cam:101491216 534.643