Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02957 ATGGGGCATAGACACATATATAATGCATCATCTCCAATGTTTGAGGGTGAAGCTGACCAGAATTGGAATCACATGCATACTGATCAACATCATGTGAACCATGAGGGGACTAGCTCTTCAGAGAATGGTTCTTTTGTTTATCCTGTGGAAAATATATCTATAGATAATATTTATTTCCCCTCTCATTGGAACTCCAACACAAGATCAAATGGATATGCATCCTCAGGCCCCAGCATTGAAGTGCCTCCTCCTCCTCCACCACCACCTCTTCCTCAGCAATTGGACACACCAGGCACTTCTAACGATCATTTTATGCATACATCTAATGCTGGACCTTTCTTTGCAGTATCTGAAAATTATGTACACCCACCTCCGTCTTCTTCCAATTATGACAGACATGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGGGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTTTACGAGAGAGGCAGTTCAAGTGGATATTTTAATGCTGGGAGCTCAACCGATCTTCCTACACCTCCAGAATCATGGCCAGAGAAACCAAATATGAATTCTCAATATATGCCCTGGGATCATGTTGCTATGACACCCACATTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTACGGAATGTAAGGAGCCGTTCTGCACTTGATTTGGAACCCAACCTGTCTAGGACCCATTTACCAGTTAACCATTCACTCAACTCGTACCTTACTGCCTCACCATTCGGCCATTGTAGCTTGGCAGATCTTTCAGCTCAGGTTACTACCCCTTTGGCAAGGGATTGGAGCCAAATGAATGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTCTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATACTGCTGCTGCTGCTAGTAATGCTCCTGTAGATGTTGGAAGCTTCCATCATGAATTTGCTTTCAGGGCTTCTTCAAACTTGCGCTTGGGACATGCGGCACCTTCAGATAATGGATTGCCTATGGTACCTGAAGGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCTAGAATTTCGAGTGAAAGATATAGATCATTGGCCGATGATGCTGGTCTCCATGCTAGATTTTCCTCTGAGGTACCGGGTTTCATGGTTGTTGAGCGTGCTTCACTGTATGGCTCGAGGAATATACTTGATCAGCACAGAGACATGAGAATGGACGTAGATAACATGAGCTATGAGGAACTTCTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCCGAGGATGTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGACCAATGCCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAATATGGATGATGTCGGGACACTTAAAACTTGTGGACATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGTTTTGCCTGAGGATAAGAAGGATAAATAA 1593 0.4407 MGHRHIYNASSPMFEGEADQNWNHMHTDQHHVNHEGTSSSENGSFVYPVENISIDNIYFPSHWNSNTRSNGYASSGPSIEVPPPPPPPPLPQQLDTPGTSNDHFMHTSNAGPFFAVSENYVHPPPSSSNYDRHAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPTPPESWPEKPNMNSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSALDLEPNLSRTHLPVNHSLNSYLTASPFGHCSLADLSAQVTTPLARDWSQMNVTPANGRVLLPDASTSGLETSHFPVGNTAAAASNAPVDVGSFHHEFAFRASSNLRLGHAAPSDNGLPMVPEGYSSRHPRPLTTVGWRNSDRNGRSRISSERYRSLADDAGLHARFSSEVPGFMVVERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSEDVLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDKKDK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02957 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 524 IPR013083 -
Vifa5g02957 530 CDD RING-H2_RNF24-like 477 522 - -
Vifa5g02957 530 MobiDBLite consensus disorder prediction 355 376 - -
Vifa5g02957 530 Pfam Ring finger domain 476 519 IPR001841 -
Vifa5g02957 530 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 442 523 - -
Vifa5g02957 530 SUPERFAMILY RING/U-box 468 524 - -
Vifa5g02957 530 MobiDBLite consensus disorder prediction 78 94 - -
Vifa5g02957 530 MobiDBLite consensus disorder prediction 69 103 - -
Vifa5g02957 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 48 523 IPR045191 GO:0061630
Vifa5g02957 530 SMART ring_2 477 518 IPR001841 -
Vifa5g02957 530 ProSiteProfiles Zinc finger RING-type profile. 477 519 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02957 Vifa-Chr5 975394785 975397291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02957 1 529 C3H Transcription Factor Family AT2G37150 40.000 4.51e-99 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02957 - - tpra:123892936 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02957 5 975394785 975397291 Vifa5g02957 5 975394785 975397291 ECH