Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02956 ATGGGGCATAGACACATATATAATGCATCATCTCCAATGTTTGAGGGTGAAGCTGACCAGAATTGGAATCACATGCATACTGATCAACATCATGTGAACCATGAGGGGACTAGCTCTTCAGAGAATGGTTCTTTTGTTTATCCTGTGGAAAATATATCTATAGATAATATTTATTTCCCCTCTCATTGGAACTCCAACACAAGATCAAATGGATATGCATCCTCAGGCCCCAGCATTGAAGTGCCTCCTCCTCCTCCACCACCACCTCTTCCTCAGCAATTGGACACACCAGGCACTTCTAACGATCATTTTATGCATACATCTAATGCTGGACCTTTCTTTGCAGTATCTGAAAATTATGTACACCCACCTCCGTCTTCTTCCAATTATGACAGACATGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGGGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTTTACGAGAGAGGCAGTTCAAGTGGATATTTTAATGCTGGGAGCTCAACCGATCTTCCTACACCTCCAGAATCATGGCCAGAGAAACCAAATATGAATTCTCAATATATGCCCTGGGATCATGTTGCTATGACACCCACATTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTACGGAATGTAAGGAGCCGTTCTGCACTTGATTTGGAACCCAACCTGTCTAGGACCCATTTACCAGTTAACCATTCACTCAACTCGTACCTTACTGCCTCACCATTCGGCCATTGTAGCTTGGCAGATCTTTCAGCTCAGGTTACTACCCCTTTGGCAAGGGATTGGAGCCAAATGAATGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTCTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATACTGCTGCTGCTGCTAGTAATGCTCCTGTAGATGTTGGAAGCTTCCATCATGAATTTGCTTTCAGGGCTTCTTCAAACTTGCGCTTGGGACATGCGGCACCTTCAGATAATGGATTGCCTATGGTACCTGAAGGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACAGTGACAGAAATGGAAGGTCTAGAATTTCGAGTGAAAGATATAGATCATTGGCCGATGATGCTGGTCTCCATGCTAGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGTGCTTCACTGTATGGCTCGAGGAATATACTTGATCAGCACAGAGACATGAGAATGGACGTAGATAACATGAGCTATGAGGAACTTCTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCCGAGGATGTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGACCAATGCCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAATATGGATGATGTCGGGACACTTAAAACTTGTGGACATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGTTTTGCCTGAGGATAAGAAGGATAAATAA 1587 0.4398 MGHRHIYNASSPMFEGEADQNWNHMHTDQHHVNHEGTSSSENGSFVYPVENISIDNIYFPSHWNSNTRSNGYASSGPSIEVPPPPPPPPLPQQLDTPGTSNDHFMHTSNAGPFFAVSENYVHPPPSSSNYDRHAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPTPPESWPEKPNMNSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSALDLEPNLSRTHLPVNHSLNSYLTASPFGHCSLADLSAQVTTPLARDWSQMNVTPANGRVLLPDASTSGLETSHFPVGNTAAAASNAPVDVGSFHHEFAFRASSNLRLGHAAPSDNGLPMVPEGYSSRHPRPLTTVGWRNSDRNGRSRISSERYRSLADDAGLHARFSSEGFMVVERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSEDVLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDKKDK 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02956 528 Pfam Ring finger domain 474 517 IPR001841 -
Vifa5g02956 528 CDD RING-H2_RNF24-like 475 520 - -
Vifa5g02956 528 ProSiteProfiles Zinc finger RING-type profile. 475 517 IPR001841 -
Vifa5g02956 528 SMART ring_2 475 516 IPR001841 -
Vifa5g02956 528 SUPERFAMILY RING/U-box 466 522 - -
Vifa5g02956 528 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 48 521 IPR045191 GO:0061630
Vifa5g02956 528 MobiDBLite consensus disorder prediction 78 94 - -
Vifa5g02956 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 522 IPR013083 -
Vifa5g02956 528 MobiDBLite consensus disorder prediction 69 103 - -
Vifa5g02956 528 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 440 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02956 Vifa-Chr5 975394785 975397291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02956 1 527 C3H Transcription Factor Family AT2G37150 40.141 5.35e-101 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02956 - - tpra:123892936 914.064