Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02952 ATGTCCAACGACTCTTTGTTCGCCGGCATTCGTTTTGATAGAAAGAGATTCGGCGCCGACATTGCCAGGTTTCAGAAAAAAGATGTCGGTACTAGTTTGGCGAAGATTCAGAGTATGATAGAAGATGAAGAAATCAAGGAAACAATAGAAGCCGTGTCTTCAAAGAAAAGGAAGCGCAAGAAAACCTCTTCGGAAGCTGTTGATGGATTCAGTGTGTTCCGAAGTTCGACGTCGAAGTCAAACGAAAAGGTCCAAGCCGGCGATGATGATGAGTCCATTCGGCTGAAGAAAGAAAAAAATAAGCAACTCGAGCGTGATGCTATCTTCAGGAAGAGTCGTAACATTCATGTCTCCGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGTTATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAGCCAACACCGATCCAACAGCAGGCTATTCCAATACTCTTACAGGATCGTGAATGCTTTGCCTGTGCCCCAACCGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGGTGGCGTTCGAGCTATTATCATCTGTCATAGCCGCGAATTATCTGGTCAAACATACAGAGAATGCAAAAAGTTTGCTAAAGGGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAAATTTCCTTGTGACATACTTATATCCACGCCCTTTCGATTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGAATGTTCAAGCAGATTGATGCTATTATCAAAGCATGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCCACTTTACCTGATTTTATTGAAGATAAAGCTCGAGAACTTATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCGGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGAGGAATGGATTTTAAAGGCATTAACTGCGTGATCAATTATGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGTAGAGCAGGGAGGAGTGGCGAAGCAATTACATTTTACACAGAAGAGGATATTCCATTCTTGAAGAACGTAGCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCCTGGTTGACGGAGCTGCAGAAAAAGAAGTGGAGGAAGCACCGACCCAAAAGAGATTCTATCTCAACTAAACCTGATCGGCCCAAACGATATTCTATCTCAACTAAACCTGACGGAGTTGCAGAAAAAGAAGTGGAGGAAACACCCGGCCCAAAAGAGATTCTATCTCAACTAAATCCGACAGAGTTGCAGAAAAAGAAGTCACAGAAAAAGAAGTGGAGGAAGAACCGACCCAAAAGAGATTCTATCTCAACTAAACCGGATCTTTAA 1761 0.4259 MSNDSLFAGIRFDRKRFGADIARFQKKDVGTSLAKIQSMIEDEEIKETIEAVSSKKRKRKKTSSEAVDGFSVFRSSTSKSNEKVQAGDDDESIRLKKEKNKQLERDAIFRKSRNIHVSGYNVPSPLQSFDELKTSYKCPSYLLRNLAELGFREPTPIQQQAIPILLQDRECFACAPTGSGKTLAFVCPMLMKLKAHSKGGVRAIIICHSRELSGQTYRECKKFAKGEKFRIKLMTKHLLEGSDFSKFPCDILISTPFRLRLATQRKKLDLSRVEYLVLDESDKLFEPGMFKQIDAIIKACTNPSIIRSLFSATLPDFIEDKARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLKNVANLMASSGCEVPSWLTELQKKKWRKHRPKRDSISTKPDRPKRYSISTKPDGVAEKEVEETPGPKEILSQLNPTELQKKKSQKKKWRKNRPKRDSISTKPDL 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02952 586 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Vifa5g02952 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 477 IPR027417 -
Vifa5g02952 586 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 125 574 - -
Vifa5g02952 586 MobiDBLite consensus disorder prediction 516 547 - -
Vifa5g02952 586 Gene3D - 88 331 IPR027417 -
Vifa5g02952 586 Pfam Helicase conserved C-terminal domain 367 465 IPR001650 -
Vifa5g02952 586 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 504 IPR001650 -
Vifa5g02952 586 CDD DEADc_DDX52 142 335 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vifa5g02952 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Vifa5g02952 586 SMART helicmild6 384 465 IPR001650 -
Vifa5g02952 586 SMART ultradead3 150 347 IPR014001 -
Vifa5g02952 586 Pfam DEAD/DEAH box helicase 155 317 IPR011545 GO:0003676|GO:0005524
Vifa5g02952 586 MobiDBLite consensus disorder prediction 507 586 - -
Vifa5g02952 586 CDD SF2_C_DEAD 344 474 - -
Vifa5g02952 586 Gene3D - 332 509 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02952 Vifa-Chr5 972607602 972612710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02952 125 503 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 4.73e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02952 K14779 - gmx:100800969 833.172