Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02951 ATGTCCAACGACTCTTTGTTCGCCGGCATTCGTTTTGATAGAAAGAGATTCGGCGCCGACATTGCCAGGTTTCAGAAAAAAGATGTCGGTACTAGTTTGGCGAAGATTCAGAGTATGATAGAAGATGAAGAAATCAAGGAAACAATAGAAGCCGTGTCTTCAAAGAAAAGGAAGCGCAAGAAAACCTCTTCGGCTGTTGATGGATTCAGTGTGTTCCGAAGTTCGACGTCGAAGTCAAACGAAAAGGTCCAAGCCGGCGATGATGATGAGTCCATTCGGCTGAAGAAAGAAAAAAATAAGCAACTCGAGCGTGATGCTATCTTCAGGAAGAGTCGTAACATTCATGTCTCCGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGTTATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAGCCAACACCGATCCAACAGCAGGCTATTCCAATACTCTTACAGGATCGTGAATGCTTTGCCTGTGCCCCAACCGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGGTGGCGTTCGAGCTATTATCATCTGTCATAGCCGCGAATTATCTGGTCAAACATACAGAGAATGCAAAAAGTTTGCTAAAGGGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAAATTTCCTTGTGACATACTTATATCCACGCCCTTTCGATTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGAATGTTCAAGCAGATTGATGCTATTATCAAAGCATGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCCACTTTACCTGATTTTATTGAAGATAAAGCTCGAGAACTTATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCGGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGAGGAATGGATTTTAAAGGCATTAACTGCGTGATCAATTATGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGTAGAGCAGGGAGGAGTGGCGAAGCAATTACATTTTACACAGAAGAGGATATTCCATTCTTGAAGAACGTAGCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCCTGGTTGACGGAGCTGCAGAAAAAGAAGTGGAGGAAGCACCGACCCAAAAGAGATTCTATCTCAACTAAACCTGATCGGCCCAAACGATATTCTATCTCAACTAAACCTGACGGAGTTGCAGAAAAAGAAGTGGAGGAAACACCCGGCCCAAAAGAGATTCTATCTCAACTAAATCCGACAGAGTTGCAGAAAAAGAAGTCACAGAAAAAGAAGTGGAGGAAGAACCGACCCAAAAGAGATTCTATCTCAACTAAACCGGATCTTTAA 1758 0.4261 MSNDSLFAGIRFDRKRFGADIARFQKKDVGTSLAKIQSMIEDEEIKETIEAVSSKKRKRKKTSSAVDGFSVFRSSTSKSNEKVQAGDDDESIRLKKEKNKQLERDAIFRKSRNIHVSGYNVPSPLQSFDELKTSYKCPSYLLRNLAELGFREPTPIQQQAIPILLQDRECFACAPTGSGKTLAFVCPMLMKLKAHSKGGVRAIIICHSRELSGQTYRECKKFAKGEKFRIKLMTKHLLEGSDFSKFPCDILISTPFRLRLATQRKKLDLSRVEYLVLDESDKLFEPGMFKQIDAIIKACTNPSIIRSLFSATLPDFIEDKARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLKNVANLMASSGCEVPSWLTELQKKKWRKHRPKRDSISTKPDRPKRYSISTKPDGVAEKEVEETPGPKEILSQLNPTELQKKKSQKKKWRKNRPKRDSISTKPDL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02951 585 MobiDBLite consensus disorder prediction 506 585 - -
Vifa5g02951 585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 503 IPR001650 -
Vifa5g02951 585 SMART ultradead3 149 346 IPR014001 -
Vifa5g02951 585 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Vifa5g02951 585 Pfam DEAD/DEAH box helicase 154 316 IPR011545 GO:0003676|GO:0005524
Vifa5g02951 585 Pfam Helicase conserved C-terminal domain 366 464 IPR001650 -
Vifa5g02951 585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Vifa5g02951 585 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 71 573 - -
Vifa5g02951 585 MobiDBLite consensus disorder prediction 515 546 - -
Vifa5g02951 585 SMART helicmild6 383 464 IPR001650 -
Vifa5g02951 585 CDD DEADc_DDX52 141 334 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vifa5g02951 585 CDD SF2_C_DEAD 343 473 - -
Vifa5g02951 585 Gene3D - 331 508 IPR027417 -
Vifa5g02951 585 Gene3D - 87 330 IPR027417 -
Vifa5g02951 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02951 Vifa-Chr5 972607602 972612710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02951 124 502 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 4.60e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02951 K14779 - gmx:100800969 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02951 5 972607602 972612710 Vifa5g02951 5 972607602 972612710 ECH